Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB9X60_RS22850 Genome accession   NZ_CP166435
Coordinates   4703977..4704969 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain 2024CK-00616     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4698977..4709969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9X60_RS22840 (AB9X60_22820) yieP 4701869..4702561 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  AB9X60_RS22845 (AB9X60_22825) mdtD 4702584..4704011 (+) 1428 WP_001280858.1 multidrug transporter subunit MdtD -
  AB9X60_RS22850 (AB9X60_22830) cytR 4703977..4704969 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  AB9X60_RS22855 (AB9X60_22835) rbsK 4704973..4705902 (-) 930 WP_151321428.1 ribokinase -
  AB9X60_RS22860 (AB9X60_22840) rbsB 4706028..4706918 (-) 891 WP_001333816.1 ribose ABC transporter substrate-binding protein RbsB -
  AB9X60_RS22865 (AB9X60_22845) rbsC 4706943..4707908 (-) 966 WP_000211857.1 ribose ABC transporter permease -
  AB9X60_RS22870 (AB9X60_22850) rbsA 4707913..4709418 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  AB9X60_RS22875 (AB9X60_22855) rbsD 4709426..4709845 (-) 420 WP_001301979.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=928285 AB9X60_RS22850 WP_000224470.1 4703977..4704969(-) (cytR) [Escherichia coli strain 2024CK-00616]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=928285 AB9X60_RS22850 WP_000224470.1 4703977..4704969(-) (cytR) [Escherichia coli strain 2024CK-00616]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACAATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364