Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VZW04_RS14255 Genome accession   NZ_CP143092
Coordinates   2881037..2881666 (-) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Escherichia coli strain EC190486     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2876037..2886666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZW04_RS14240 (VZW04_14240) helD 2876279..2878333 (-) 2055 WP_033554506.1 DNA helicase IV -
  VZW04_RS14245 (VZW04_14245) yccF 2878456..2878902 (+) 447 WP_001261235.1 YccF domain-containing protein -
  VZW04_RS14250 (VZW04_14250) yccS 2878912..2881074 (+) 2163 WP_023281787.1 YccS family putative transporter -
  VZW04_RS14255 (VZW04_14255) sxy/tfoX 2881037..2881666 (-) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  VZW04_RS14260 (VZW04_14260) sulA 2881885..2882394 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  VZW04_RS14265 (VZW04_14265) ompA 2882751..2883791 (+) 1041 WP_000750416.1 porin OmpA -
  VZW04_RS14270 (VZW04_14270) matP 2883867..2884319 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  VZW04_RS14275 (VZW04_14275) ycbZ 2884505..2886265 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=928237 VZW04_RS14255 WP_000839152.1 2881037..2881666(-) (sxy/tfoX) [Escherichia coli strain EC190486]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=928237 VZW04_RS14255 WP_000839152.1 2881037..2881666(-) (sxy/tfoX) [Escherichia coli strain EC190486]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995