Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB8O64_RS09215 Genome accession   NZ_CP166299
Coordinates   2063988..2067068 (-) Length   1026 a.a.
NCBI ID   WP_370418710.1    Uniprot ID   -
Organism   Streptomyces sp. QH1-20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2058988..2072068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O64_RS09190 (AB8O64_09200) - 2059400..2060248 (-) 849 WP_370418705.1 hypothetical protein -
  AB8O64_RS09195 (AB8O64_09205) - 2060253..2060897 (-) 645 WP_370418706.1 papain-like cysteine protease family protein -
  AB8O64_RS09200 (AB8O64_09210) - 2061126..2062070 (+) 945 WP_370418707.1 hypothetical protein -
  AB8O64_RS09205 (AB8O64_09215) - 2062307..2062732 (-) 426 WP_370418708.1 Rieske (2Fe-2S) protein -
  AB8O64_RS09210 (AB8O64_09220) - 2062868..2063806 (+) 939 WP_370418709.1 carbohydrate kinase -
  AB8O64_RS09215 (AB8O64_09225) uvrA 2063988..2067068 (-) 3081 WP_370418710.1 excinuclease ABC subunit UvrA Machinery gene
  AB8O64_RS09220 (AB8O64_09230) - 2067318..2068016 (+) 699 WP_370418711.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  AB8O64_RS09225 (AB8O64_09235) - 2068026..2068682 (+) 657 WP_370418712.1 MBL fold metallo-hydrolase -
  AB8O64_RS09230 (AB8O64_09240) - 2069011..2070297 (+) 1287 WP_370418713.1 MFS transporter -
  AB8O64_RS09235 (AB8O64_09245) - 2070455..2071450 (-) 996 WP_370418714.1 TerC family protein -

Sequence

Protein


Download         Length: 1026 a.a.        Molecular weight: 112702.36 Da        Isoelectric Point: 8.3347

>NTDB_id=928148 AB8O64_RS09215 WP_370418710.1 2063988..2067068(-) (uvrA) [Streptomyces sp. QH1-20]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECARPISRQSPQAIVDRVLELPEGSRFQVLSPLVRERK
GEFVDLFSDLQTKGYSRARVDGETIQLSEPPKLKKQEKHTIEVVVDRLTVKDSAKRRLTDSVETALGLSGGMVILDFVDL
AEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEDKSLDEGAINPWSHGHTK
DYFSRLVGALADELGFRMDIPWAGLPQRAKKALLHGHKTQIEVRYRNRYGRERAYTTSFEGAVPFVKRRHSEAESDSSRE
RFEGYMREVPCPTCEGTRLKPIVLAVTVQERSIAEVAAMSISECADFLRDMKLTGREKKIAERVLKEVNERLRFLVDVGL
DYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVAD
WVVDIGPGAGEHGGKVVHSGPLKELLANKESMTGQYLVGKKSIAMPESRRPVDLDRRLTVRGARENNLQDIDVSFPLGVL
TAVTGVSGSGKSTLVNDILYTHLARELNAARTVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRKLFA
ETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEEA
LDFFEAVPTIARHLRTLHEVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLIKVLS
GLVDKGNSVIVIEHNLDVIKTADWVVDMGPEGGSGGGLVVAEGTPEEVASVPGSHTGKFLRELLGDRVSDAAVTKARGNG
GRKAPAKKTAPAAVRKTGVAKATVTTTAAAKKATAKKTTAKAAAAKKAAPAKKTAVKKTATRARRA

Nucleotide


Download         Length: 3081 bp        

>NTDB_id=928148 AB8O64_RS09215 WP_370418710.1 2063988..2067068(-) (uvrA) [Streptomyces sp. QH1-20]
GTGGCAGACCGTCTTATCGTCCGTGGCGCTCGCGAGCACAACCTCAAGAACGTCTCGCTCGACCTTCCGCGTGACTCCCT
CATCGTCTTCACCGGACTCTCGGGGTCGGGCAAGTCGTCCCTCGCGTTCGACACGATCTTCGCCGAGGGGCAGCGTCGTT
ACGTCGAGTCGCTCTCCTCCTACGCACGCCAGTTCCTGGGCCAGATGGACAAGCCCGATGTGGACTTCATCGAGGGCCTG
TCCCCGGCCGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACCGAGGTCTACGA
CTACCTCCGTCTGCTCTTCGCCCGCATCGGCAAGCCGCACTGCCCCGAGTGCGCGCGGCCCATCTCCCGGCAGTCGCCGC
AGGCGATCGTCGACCGGGTGCTCGAGCTGCCCGAGGGCAGCCGCTTCCAGGTGCTCTCGCCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGATCTCTTCTCCGACCTCCAGACCAAGGGCTACAGCCGTGCCCGGGTCGACGGCGAGACGATCCAGCT
CTCCGAGCCGCCCAAGCTCAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCGTCGACCGCCTCACCGTCAAGGACAGCG
CCAAGCGTCGTCTGACGGACTCGGTCGAGACCGCGCTCGGTCTCTCCGGCGGCATGGTCATCCTCGACTTCGTCGATCTC
GCCGAGGACGACCCCGAGCGTGAGCGGATGTACTCCGAGCACCTCTACTGCCCGTACGACGACCTGTCCTTCGAGGAGCT
GGAGCCGCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCGGACTGCACCGGCATCGGCACCCGCATGGAGGTCG
ACCCGGAGCTGATCGTCCCCGACGAGGACAAGTCCCTCGACGAGGGCGCGATCAACCCCTGGTCCCACGGCCACACCAAG
GACTACTTCAGCCGTCTGGTGGGCGCCCTGGCCGACGAGCTCGGCTTCCGTATGGACATCCCCTGGGCGGGGCTCCCGCA
GCGGGCCAAAAAGGCGCTGCTGCACGGCCACAAGACGCAGATCGAGGTCCGCTACCGCAACCGCTACGGGCGCGAGCGCG
CATACACCACGTCCTTCGAGGGCGCGGTGCCGTTCGTCAAGCGGCGGCACTCGGAGGCGGAGAGCGACTCCAGCCGCGAG
CGCTTCGAGGGCTATATGCGCGAGGTGCCCTGCCCGACCTGTGAGGGCACACGGCTCAAGCCGATCGTCCTCGCGGTCAC
CGTGCAGGAGCGGTCCATCGCGGAGGTCGCCGCGATGTCGATCAGCGAGTGCGCCGACTTCCTCCGGGACATGAAGCTCA
CCGGCCGCGAGAAGAAGATCGCCGAGCGGGTGCTCAAGGAGGTCAACGAGCGGCTGCGGTTCCTGGTCGACGTCGGCCTG
GACTACCTCTCGCTGAACCGGGCCGCGGGCACCCTCTCCGGTGGCGAGGCCCAGCGCATCCGGCTCGCCACCCAGATCGG
CTCCGGCCTCGTCGGCGTGCTCTACGTCCTGGACGAGCCGTCCATCGGCCTGCACCAGCGCGACAACCACCGCCTGATCG
AGACCCTCGTGCGCCTGCGCGACATGGGCAACACCCTGATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCGGAC
TGGGTCGTCGACATCGGCCCGGGCGCGGGCGAGCACGGTGGCAAGGTGGTGCACAGCGGCCCGCTGAAGGAGCTGCTGGC
CAACAAGGAGTCGATGACCGGGCAGTACCTCGTCGGCAAGAAGTCCATCGCCATGCCGGAGAGCCGCCGGCCGGTGGACC
TCGACCGCCGGCTGACGGTGCGCGGCGCCCGCGAGAACAATCTCCAGGACATCGACGTCTCCTTCCCGCTCGGCGTGCTC
ACGGCCGTCACCGGTGTGTCCGGGTCGGGCAAGTCGACCCTGGTCAACGACATCCTCTACACCCACCTGGCCCGTGAGCT
GAACGCGGCGCGGACCGTCCCCGGCCGGCACACCCGTGTCGACGGCGACGACCTGGTGGACAAGGTCGTGCACGTCGACC
AGTCGCCCATCGGCCGTACGCCGCGCTCCAACCCGGCCACGTACACCGGCGTCTTCGACCACGTCCGCAAGCTCTTCGCG
GAGACGATGGAGGCGAAGGTCCGCGGCTATCTGCCCGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAACTG
CTCCGGCGACGGCACCATCAAGATCGAGATGAACTTCCTGCCGGATGTGTACGTGCCGTGCGAGGTCTGCCACGGCGCGC
GCTACAACCGGGAGACCCTGGAGGTGCACTACAAGGGCAAGTCCATCGCCGAGGTGCTGGACATGCCCATCGAGGAGGCG
CTGGACTTCTTCGAGGCCGTGCCGACCATCGCCCGCCACCTGCGCACGCTCCACGAGGTCGGGCTCGGGTACGTCCGGCT
CGGCCAGTCCGCGCCGACGCTCTCCGGTGGCGAGGCCCAGCGGGTGAAGCTCGCGAGCGAGCTACAGAAGCGATCGACGG
GCCGCACGGTCTATGTGCTCGACGAGCCCACCACCGGGCTGCACTTCGAGGACATCAGCAAGCTGATCAAGGTGCTGTCC
GGACTGGTCGACAAGGGCAACAGCGTGATCGTCATCGAGCACAACCTTGATGTGATCAAGACGGCGGACTGGGTCGTCGA
CATGGGCCCGGAGGGCGGCAGCGGCGGCGGACTCGTCGTCGCCGAGGGCACCCCGGAGGAGGTCGCCTCCGTCCCGGGCA
GCCACACCGGAAAGTTCCTGCGTGAGCTGCTGGGCGACCGCGTGAGCGACGCGGCGGTGACCAAGGCACGCGGCAACGGC
GGCCGGAAGGCCCCGGCGAAGAAGACCGCGCCGGCCGCAGTCCGGAAGACCGGGGTCGCGAAGGCGACGGTCACGACGAC
CGCGGCCGCCAAGAAGGCCACGGCCAAGAAGACGACGGCCAAGGCGGCTGCGGCGAAGAAGGCCGCACCCGCCAAGAAGA
CGGCCGTCAAGAAGACGGCCACGCGGGCGCGCCGCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(628-864)

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.614

92.105

0.521
  uvrA Streptococcus pneumoniae TIGR4

56.614

92.105

0.521
  uvrA Streptococcus pneumoniae D39

56.614

92.105

0.521