Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB8O64_RS02590 Genome accession   NZ_CP166299
Coordinates   550881..553184 (-) Length   767 a.a.
NCBI ID   WP_370417644.1    Uniprot ID   -
Organism   Streptomyces sp. QH1-20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 545881..558184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O64_RS02570 (AB8O64_02565) - 545896..546792 (+) 897 WP_370417641.1 AIPR family protein -
  AB8O64_RS02575 (AB8O64_02570) nhaA 546900..548237 (-) 1338 WP_370417642.1 Na+/H+ antiporter NhaA -
  AB8O64_RS02580 (AB8O64_02575) - 548382..549920 (-) 1539 WP_370417643.1 alanine/glycine:cation symporter family protein -
  AB8O64_RS02585 (AB8O64_02580) - 550260..550741 (-) 482 Protein_516 hypothetical protein -
  AB8O64_RS02590 (AB8O64_02585) uvrA 550881..553184 (-) 2304 WP_370417644.1 ATP-binding cassette domain-containing protein Machinery gene
  AB8O64_RS02595 (AB8O64_02590) - 553187..554005 (-) 819 WP_370417645.1 aldo/keto reductase -
  AB8O64_RS02600 (AB8O64_02595) - 554078..555025 (-) 948 WP_370417646.1 Gfo/Idh/MocA family protein -
  AB8O64_RS02605 (AB8O64_02600) - 555100..555918 (-) 819 WP_370417647.1 VOC family protein -
  AB8O64_RS02610 (AB8O64_02605) - 556068..557570 (-) 1503 WP_370417648.1 MFS transporter -

Sequence

Protein


Download         Length: 767 a.a.        Molecular weight: 82614.82 Da        Isoelectric Point: 7.1418

>NTDB_id=928134 AB8O64_RS02590 WP_370417644.1 550881..553184(-) (uvrA) [Streptomyces sp. QH1-20]
MTSNMPAHGEIVITGARVHNLQDVSVHIPKGVITVFTGVSGSGKSSVVFDTIAVESQRQLNETFPYFVRNRLPRYEKPEA
DAIEDLSPAIVVDQKPLGGGSRSTVGTMTDIASLIRLLFSRAGEPSAGMSTAYSFNDPTGACPTCQGLGHTVQLDLDRFF
DTDKSLNTGALLFPLFNVGGVQWTLFTRSGLFDNDKPLKKYSKREWDTLLHGSPKGEVKFEPATRMGTQNVTYEGIVDRF
NRLYLNRDLSTLSKRTRDAVQHFTTEGECPACHGARLNDAALKAKINGLSIADHMTMEVSDLIRELGKVKHPLGTPLAKA
TIDALKRIDAIGLGYLHLGRETGSLSGGEGQRLKIVRNLGSSLTGMTYIFDEPSTGLHPRDVHRVNELLAQLRDQGNTLL
IVEHDRDVITAADHVIDMGPGAGTHGGQVVFQGTVTQLRHAGTLTGRYLEAAIPLKTSVRTPTGQMKIKNAALHNLKNVS
VEIPTGVLVAVTGVAGSGKSSLISEVFTAQHPEAVYIDQGAIGSNSRSTPASWVGIMDAIRKRFADANDVPAGLFSFNST
GACPACGGKGSITADMAFADPVTTVCETCDGRRYSDEALSRRLRGKTIVDVLDLTCEEATEFFTAPAEKKIRTALTTLAE
VGLGYLTLGQSLSTLSGGERQRLKLAGHLGATSSIYVMDEPTTGLHMADIATLQRLLDRLVDDGNTVLVIEHNLDIVKQA
DWIIDMGPDGGRHGGQILFTGTPAQLAKDRKSHTAKALRHDLDRHQV

Nucleotide


Download         Length: 2304 bp        

>NTDB_id=928134 AB8O64_RS02590 WP_370417644.1 550881..553184(-) (uvrA) [Streptomyces sp. QH1-20]
ATGACCAGCAACATGCCCGCGCACGGAGAGATCGTCATCACCGGCGCCCGCGTACACAACCTCCAGGACGTCTCGGTGCA
CATCCCCAAGGGAGTGATCACCGTGTTCACCGGGGTGTCGGGGTCGGGGAAGTCGTCCGTGGTCTTCGACACCATCGCCG
TCGAGTCGCAGCGACAGCTGAACGAGACCTTCCCATACTTCGTGCGCAACCGCCTGCCCCGTTACGAGAAGCCCGAGGCC
GACGCCATCGAGGACCTGTCGCCGGCAATCGTCGTAGACCAGAAGCCGCTGGGCGGCGGTTCGCGCTCGACGGTGGGAAC
CATGACGGATATCGCCTCGCTGATCCGCCTGCTGTTCTCCCGCGCGGGCGAGCCGTCGGCAGGGATGTCGACGGCGTACT
CCTTCAACGACCCCACCGGCGCCTGTCCCACCTGCCAGGGCCTGGGCCATACCGTCCAGCTCGACCTGGACCGCTTCTTC
GACACCGACAAGTCCCTGAACACCGGTGCACTGCTGTTCCCGCTGTTCAACGTCGGCGGCGTGCAGTGGACGCTGTTCAC
CCGCTCCGGGCTGTTCGACAACGACAAACCGCTGAAGAAGTACTCCAAGAGGGAGTGGGACACCCTCCTGCACGGCAGCC
CCAAGGGGGAGGTGAAGTTCGAGCCGGCGACGCGGATGGGCACGCAGAACGTCACCTACGAGGGCATTGTTGACCGGTTC
AACCGCCTCTATCTCAACCGTGACCTGTCCACTCTGTCCAAGCGCACCCGGGATGCGGTTCAGCACTTCACCACGGAGGG
CGAGTGCCCCGCCTGCCATGGTGCCCGCCTGAACGATGCCGCCCTGAAGGCAAAGATCAATGGACTGTCGATCGCCGACC
ACATGACCATGGAGGTCAGCGATCTCATCAGAGAACTGGGCAAGGTCAAGCACCCGCTCGGCACACCGCTCGCGAAGGCC
ACGATCGACGCCCTGAAGCGGATCGATGCCATCGGCCTGGGCTACCTCCACCTGGGCCGCGAGACCGGCAGCCTCTCCGG
CGGAGAAGGGCAGCGGCTGAAGATCGTACGCAACCTCGGCTCCAGCCTGACCGGCATGACGTACATCTTCGACGAGCCCT
CCACCGGCCTGCACCCGCGCGACGTCCACCGGGTGAACGAACTCCTCGCCCAGCTGCGCGACCAGGGCAACACCCTGCTC
ATCGTCGAACACGACCGCGACGTCATCACCGCAGCCGACCACGTCATCGACATGGGCCCCGGCGCCGGCACGCACGGCGG
CCAGGTCGTCTTCCAGGGAACCGTCACCCAGCTCCGCCACGCGGGAACCCTCACCGGCCGGTACCTGGAGGCGGCCATCC
CGCTCAAGACCAGCGTCCGGACCCCGACGGGCCAGATGAAAATCAAGAATGCGGCGCTGCACAACCTGAAGAACGTCAGC
GTGGAGATCCCCACCGGTGTGCTCGTCGCCGTCACCGGGGTCGCCGGGTCGGGCAAGTCCAGCCTGATCTCCGAGGTCTT
CACCGCCCAGCACCCCGAGGCCGTCTACATCGACCAGGGCGCCATCGGCTCCAACTCCCGCTCCACACCCGCGAGCTGGG
TCGGCATCATGGATGCCATCCGCAAGCGATTCGCCGACGCCAATGACGTGCCGGCCGGGTTGTTCAGTTTCAACTCCACC
GGCGCCTGCCCCGCCTGCGGCGGCAAGGGCAGTATCACCGCCGACATGGCCTTCGCCGACCCCGTCACCACCGTCTGCGA
AACCTGCGACGGCCGCCGCTACAGTGACGAGGCACTCTCCCGCCGCCTGCGCGGAAAGACCATCGTCGACGTACTGGACC
TGACCTGCGAAGAAGCGACAGAGTTCTTCACCGCACCGGCCGAGAAGAAGATCCGCACCGCGCTCACGACCCTGGCGGAG
GTCGGCCTGGGCTACCTCACCCTCGGCCAGTCCCTGTCCACCCTTTCCGGGGGAGAGCGCCAGCGTCTCAAGCTCGCCGG
CCACCTGGGCGCGACCAGCAGCATCTACGTGATGGACGAACCCACCACCGGCCTGCACATGGCCGACATCGCCACCCTGC
AACGCCTGCTGGACCGGCTCGTCGACGACGGCAACACCGTCCTCGTCATCGAACACAACCTCGACATCGTCAAACAAGCC
GACTGGATCATCGACATGGGCCCCGACGGCGGCCGCCACGGCGGCCAGATCCTCTTCACCGGCACCCCCGCGCAACTGGC
CAAAGACCGAAAGTCCCACACCGCCAAGGCCCTGCGTCACGACCTCGACCGGCATCAGGTCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(476-682)

UvrA DNA-binding domain (UvrA_DNA-bind)

(190-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

38.451

99.348

0.382
  uvrA Streptococcus pneumoniae TIGR4

38.451

99.348

0.382
  uvrA Streptococcus pneumoniae D39

38.451

99.348

0.382