Detailed information NTG0928046

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB8K37_RS00115
• Genome accession: NZ_CP166186
• Coordinates: 21982..22974 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CRE78
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 16982..27974

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8K37_RS00085 (AB8K37_00085)	ispD	17043..17753 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB8K37_RS00090 (AB8K37_00090)	ispF	17753..18232 (+)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB8K37_RS00095 (AB8K37_00095)	truD	18229..19278 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
AB8K37_RS00100 (AB8K37_00100)	surE	19259..20020 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB8K37_RS00105 (AB8K37_00105)	pcm	20014..20640 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AB8K37_RS00110 (AB8K37_00110)	nlpD	20825..21919 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AB8K37_RS00115 (AB8K37_00115)	rpoS	21982..22974 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AB8K37_RS00120 (AB8K37_00120)	-	23095..23502 (-)	408	WP_001521151.1	MarR family winged helix-turn-helix transcriptional regulator	-
AB8K37_RS00125 (AB8K37_00125)	-	23649..24242 (+)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AB8K37_RS00130 (AB8K37_00130)	-	24242..25669 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AB8K37_RS00135 (AB8K37_00135)	-	25680..25916 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AB8K37_RS00140 (AB8K37_00140)	ygbN	25955..27319 (-)	1365	WP_000104455.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=928046 AB8K37_RS00115 WP_000081550.1 21982..22974(+) (rpoS) [Escherichia coli strain CRE78]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=928046 AB8K37_RS00115 WP_000081550.1 21982..22974(+) (rpoS) [Escherichia coli strain CRE78]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715