Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   AB9A07_RS13095 Genome accession   NZ_CP166018
Coordinates   2603303..2605408 (+) Length   701 a.a.
NCBI ID   WP_001058988.1    Uniprot ID   Q8NUR7
Organism   Staphylococcus aureus strain GIMC7004:SaO-15 isolate GIMC7004:SaO-15     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 2598303..2610408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9A07_RS13070 (AB9A07_13080) - 2598332..2598550 (+) 219 WP_000011687.1 sterile alpha motif-like domain-containing protein -
  AB9A07_RS13075 (AB9A07_13085) - 2598939..2599370 (+) 432 WP_001836833.1 CHAP domain-containing protein -
  AB9A07_RS13080 (AB9A07_13090) - 2599508..2600788 (-) 1281 WP_001180331.1 hydroxymethylglutaryl-CoA reductase, degradative -
  AB9A07_RS13085 (AB9A07_13095) - 2601042..2602208 (+) 1167 WP_000151982.1 hydroxymethylglutaryl-CoA synthase -
  AB9A07_RS13090 (AB9A07_13100) - 2602373..2602894 (-) 522 WP_000455994.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AB9A07_RS13095 (AB9A07_13105) clpE 2603303..2605408 (+) 2106 WP_001058988.1 ATP-dependent Clp protease ATP-binding subunit ClpL Regulator
  AB9A07_RS13100 (AB9A07_13110) - 2605470..2605640 (-) 171 WP_000111119.1 FeoB-associated Cys-rich membrane protein -
  AB9A07_RS13105 (AB9A07_13115) feoB 2605653..2607647 (-) 1995 WP_000432899.1 ferrous iron transport protein B -
  AB9A07_RS13110 (AB9A07_13120) - 2607659..2607886 (-) 228 WP_000932073.1 FeoA family protein -

Sequence


Protein


Download         Length: 701 a.a.        Molecular weight: 77836.22 Da        Isoelectric Point: 4.6056

>NTDB_id=928043 AB9A07_RS13095 WP_001058988.1 2603303..2605408(+) (clpE) [Staphylococcus aureus strain GIMC7004:SaO-15 isolate GIMC7004:SaO-15]
MNNGFFNSDFDSIFRRMMQDMQGSNQVGNKKYYINGKEVSPEELAQLTQQGGNHSAEQSAQAFQQAAQRQQGQQGGNGNY
LEQIGRNLTQEARDGLLDPVIGRDKEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISV
DISSLEAGTQYRGAFEENIQKLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDE
YRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITA
AHLSAQSPAVDKVETEKRISELENDKRKAVSAEEYKKADDIQNEIKSLQDKLENSNGEHTAVATVHDISDTIQRLTGIPV
SQMDDNDIERLKNISNRLRSKIIGQDQAVEMVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAIDLFGNKDA
LIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI
NFKNTIIICTSNAGFGNGNDAEEKDIMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDV
SQDAKDWLIEEGYDEELGARPLRRIVEQQVRDKITDYYLDHTDVKHVDIDVEDNELVVKGK

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=928043 AB9A07_RS13095 WP_001058988.1 2603303..2605408(+) (clpE) [Staphylococcus aureus strain GIMC7004:SaO-15 isolate GIMC7004:SaO-15]
ATGAATAACGGTTTTTTCAATAGTGACTTTGATTCAATTTTTCGAAGAATGATGCAAGATATGCAAGGTTCAAATCAAGT
CGGTAACAAAAAGTACTATATTAATGGTAAAGAAGTTTCACCTGAAGAACTAGCGCAACTCACACAACAAGGTGGCAATC
ACTCTGCTGAACAAAGTGCGCAAGCTTTTCAACAAGCAGCACAAAGACAACAAGGGCAACAAGGTGGCAACGGCAATTAT
TTAGAACAAATTGGTCGTAACCTTACGCAAGAAGCACGTGACGGTTTATTAGATCCAGTCATTGGTCGTGATAAAGAAAT
TCAAGAAACTGCTGAAGTCTTAAGTAGACGAACTAAAAACAATCCTATATTAGTTGGAGAAGCTGGTGTTGGTAAAACTG
CGATTGTTGAAGGTTTAGCACAGGCAATCGTTGAAGGAAATGTACCAGCAGCAATCAAAGACAAAGAAATTATTTCTGTA
GATATTTCATCATTAGAAGCTGGAACGCAATATCGTGGTGCTTTTGAAGAAAATATTCAAAAATTAATCGAAGGTGTTAA
ATCTTCACAAAATGCCGTACTATTCTTTGATGAAATCCATCAAATTATCGGTTCAGGTGCCACAGGAAGTGATTCAGGTA
GCAAAGGGTTATCTGATATTTTGAAACCTGCATTAAGTCGTGGTGAGATTTCTATTATTGGTGCAACAACACAAGATGAA
TATCGAAACAATATTCTTAAAGATGCTGCATTAACGCGCAGATTTAATGAAGTACTTGTTAATGAACCAAGTGCTAAAGA
TACTGTGGAAATTTTAAAAGGTATTCGCGAAAAATTCGAAGAACACCATCAAGTAAAATTACCAGATGACGTATTAAAAG
CATGTGTTGACTTATCAATTCAATATATTCCACAACGATTATTACCAGATAAAGCAATCGATGTGTTAGATATTACAGCA
GCACATTTATCTGCGCAAAGTCCAGCTGTCGATAAAGTTGAAACTGAAAAACGAATTTCTGAATTAGAAAATGATAAACG
TAAAGCGGTAAGTGCTGAAGAATATAAAAAAGCTGACGACATTCAAAATGAAATTAAATCATTACAAGATAAATTAGAAA
ATAGTAATGGTGAACATACTGCTGTTGCTACAGTTCATGATATTTCAGATACTATTCAACGATTAACTGGTATTCCAGTT
TCTCAAATGGATGATAACGATATTGAACGTTTAAAAAATATTTCTAATCGTTTAAGAAGTAAAATCATAGGTCAAGATCA
AGCTGTAGAAATGGTTTCACGTGCAATTCGCCGTAATCGTGCTGGGTTTGATGACGGCAACCGTCCAATTGGCAGTTTCC
TATTTGTTGGCCCTACTGGTGTTGGTAAAACAGAGCTTGCTAAACAATTAGCAATTGATCTATTTGGTAATAAAGATGCA
CTGATTCGACTTGATATGAGTGAATATAGTGACACAACAGCTGTTTCAAAAATGATTGGTACAACTGCTGGTTATGTCGG
TTATGATGACAATTCAAATACGTTAACTGAAAAAGTACGCCGTAATCCATACTCAGTCATTCTATTTGATGAAATCGAAA
AAGCAAATCCACAAATTTTAACATTGTTATTACAAGTAATGGATGATGGTAATTTGACTGATGGTCAAGGTAATGTCATC
AACTTTAAAAATACAATTATTATTTGTACATCAAATGCTGGCTTTGGCAATGGTAATGACGCTGAAGAAAAAGATATTAT
GCACGAAATGAAAAAATTCTTCCGCCCTGAATTCCTTAACCGCTTCAACGGCATCGTTGAATTCTTACATTTAGATAAAG
ATGCATTGCAAGATATCGTCAACTTATTATTAGACGATGTACAAGTTACATTAGACAAAAAAGGTATTACGATGGACGTT
TCTCAAGATGCGAAAGATTGGTTAATTGAAGAAGGCTATGATGAAGAATTAGGTGCACGTCCATTAAGACGTATTGTTGA
ACAGCAAGTACGTGACAAAATTACAGATTATTATCTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATA
ACGAATTAGTCGTAAAAGGTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8NUR7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

48.834

91.726

0.448

  clpE Streptococcus pneumoniae Rx1

48.298

88.017

0.425

  clpE Streptococcus pneumoniae D39

48.298

88.017

0.425

  clpE Streptococcus pneumoniae R6

48.298

88.017

0.425

  clpE Streptococcus pneumoniae TIGR4

48.298

88.017

0.425

  clpC Lactococcus lactis subsp. cremoris KW2

46.815

89.586

0.419

  clpC Bacillus subtilis subsp. subtilis str. 168

44.564

93.153

0.415

  clpC Streptococcus thermophilus LMD-9

44.392

90.3

0.401

  clpC Streptococcus thermophilus LMG 18311

44.076

90.3

0.398

  clpC Streptococcus pneumoniae TIGR4

44.175

88.16

0.389

  clpC Streptococcus pneumoniae Rx1

44.175

88.16

0.389

  clpC Streptococcus pneumoniae D39

44.175

88.16

0.389

  clpC Streptococcus mutans UA159

43.577

87.732

0.382

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

41.294

92.582

0.382