Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   AB9A07_RS06210 Genome accession   NZ_CP166018
Coordinates   1269003..1270154 (+) Length   383 a.a.
NCBI ID   WP_000020346.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GIMC7004:SaO-15 isolate GIMC7004:SaO-15     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1264003..1275154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9A07_RS06185 (AB9A07_06200) yfmH 1264831..1266117 (+) 1287 WP_000664778.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB9A07_RS06190 (AB9A07_06205) ymfI 1266117..1266821 (+) 705 WP_000646227.1 elongation factor P 5-aminopentanone reductase -
  AB9A07_RS06195 (AB9A07_06210) - 1266926..1267753 (+) 828 WP_000214890.1 YmfK family protein -
  AB9A07_RS06200 (AB9A07_06215) - 1267772..1268164 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  AB9A07_RS06205 (AB9A07_06220) pgsA 1268198..1268776 (+) 579 WP_001025092.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB9A07_RS06210 (AB9A07_06225) cinA 1269003..1270154 (+) 1152 WP_000020346.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  AB9A07_RS06215 (AB9A07_06230) recA 1270319..1271362 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  AB9A07_RS06220 (AB9A07_06235) rny 1271716..1273275 (+) 1560 WP_001050913.1 ribonuclease Y -
  AB9A07_RS06225 (AB9A07_06240) - 1273572..1273787 (-) 216 WP_000026308.1 hypothetical protein -
  AB9A07_RS06230 (AB9A07_06245) - 1273961..1274758 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43237.52 Da        Isoelectric Point: 6.1914

>NTDB_id=927994 AB9A07_RS06210 WP_000020346.1 1269003..1270154(+) (cinA) [Staphylococcus aureus strain GIMC7004:SaO-15 isolate GIMC7004:SaO-15]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=927994 AB9A07_RS06210 WP_000020346.1 1269003..1270154(+) (cinA) [Staphylococcus aureus strain GIMC7004:SaO-15 isolate GIMC7004:SaO-15]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTGGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433