Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   R8965_RS08070 Genome accession   NZ_AP028338
Coordinates   1513585..1514181 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain BCH-10307     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1508585..1519181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8965_RS08050 (B10307_15890) - 1509340..1510104 (+) 765 WP_317727890.1 TIGR02757 family protein -
  R8965_RS08055 (B10307_15900) - 1510107..1510871 (+) 765 WP_317727891.1 TSUP family transporter -
  R8965_RS08060 (B10307_15910) ctsF 1510868..1512043 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  R8965_RS08065 (B10307_15920) ctsE 1512030..1513592 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  R8965_RS08070 (B10307_15930) ctsX 1513585..1514181 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  R8965_RS08075 (B10307_15940) ctsP 1514178..1514774 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  R8965_RS08080 (B10307_15950) ctsD 1514767..1516185 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8965_RS08085 (B10307_15960) ctsR 1516163..1516474 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=92779 R8965_RS08070 WP_002779313.1 1513585..1514181(-) (ctsX) [Campylobacter coli strain BCH-10307]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=92779 R8965_RS08070 WP_002779313.1 1513585..1514181(-) (ctsX) [Campylobacter coli strain BCH-10307]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCTATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434

Multiple sequence alignment