Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VYI63_RS22110 Genome accession   NZ_CP142930
Coordinates   4498114..4499175 (+) Length   353 a.a.
NCBI ID   WP_000963143.1    Uniprot ID   A0AAV3H3S5
Organism   Escherichia coli strain B20123     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4493114..4504175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI63_RS22080 (VYI63_22080) srlD 4493366..4494145 (-) 780 WP_001077351.1 sorbitol-6-phosphate dehydrogenase -
  VYI63_RS22085 (VYI63_22085) srlB 4494149..4494520 (-) 372 WP_000216203.1 PTS glucitol/sorbitol transporter subunit IIA -
  VYI63_RS22090 (VYI63_22090) srlE 4494531..4495490 (-) 960 WP_000196936.1 PTS glucitol/sorbitol transporter subunit IIB -
  VYI63_RS22095 (VYI63_22095) srlA 4495487..4496050 (-) 564 WP_000573324.1 PTS glucitol/sorbitol transporter subunit IIC -
  VYI63_RS22100 (VYI63_22100) mltB 4496307..4497392 (+) 1086 WP_000476837.1 lytic murein transglycosylase B -
  VYI63_RS22105 (VYI63_22105) pncC 4497537..4498034 (+) 498 WP_000132237.1 nicotinamide-nucleotide amidase -
  VYI63_RS22110 (VYI63_22110) recA 4498114..4499175 (+) 1062 WP_000963143.1 recombinase RecA Machinery gene
  VYI63_RS22115 (VYI63_22115) recX 4499244..4499744 (+) 501 WP_000140506.1 recombination regulator RecX -
  VYI63_RS22120 (VYI63_22120) alaS 4499872..4502502 (+) 2631 WP_000047209.1 alanine--tRNA ligase -
  VYI63_RS22125 (VYI63_22125) csrA 4502737..4502922 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37973.37 Da        Isoelectric Point: 4.8171

>NTDB_id=927744 VYI63_RS22110 WP_000963143.1 4498114..4499175(+) (recA) [Escherichia coli strain B20123]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=927744 VYI63_RS22110 WP_000963143.1 4498114..4499175(+) (recA) [Escherichia coli strain B20123]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCAGAATCTTCCGGTAAAACCACGCTGACGTTGCAGGTG
ATCGCCGCAGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTTGATATCGACAACCTGCTGTGCTCCCAGCCGGATACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CACGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACTGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGATATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTTATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

93.768

0.79
  recA Vibrio cholerae strain A1552

84.29

93.768

0.79
  recA Pseudomonas stutzeri DSM 10701

74.184

95.467

0.708
  recA Acinetobacter baumannii D1279779

74.085

92.918

0.688
  recA Acinetobacter baylyi ADP1

73.78

92.918

0.686
  recA Glaesserella parasuis strain SC1401

69.452

98.3

0.683
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.018

92.351

0.637
  recA Ralstonia pseudosolanacearum GMI1000

70.159

89.235

0.626
  recA Streptococcus mitis SK321

60.286

99.15

0.598
  recA Streptococcus mitis NCTC 12261

60.286

99.15

0.598
  recA Helicobacter pylori strain NCTC11637

61.721

95.467

0.589
  recA Helicobacter pylori 26695

61.424

95.467

0.586
  recA Streptococcus pneumoniae TIGR4

63.467

91.501

0.581
  recA Streptococcus pneumoniae Rx1

63.467

91.501

0.581
  recA Streptococcus pneumoniae D39

63.467

91.501

0.581
  recA Streptococcus pneumoniae R6

63.467

91.501

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

91.785

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.661

94.334

0.572
  recA Streptococcus mutans UA159

62.154

92.068

0.572
  recA Streptococcus pyogenes NZ131

62.154

92.068

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.935

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.501

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.935

0.555