Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   AB5J51_RS23345 Genome accession   NZ_CP165727
Coordinates   5076961..5077938 (+) Length   325 a.a.
NCBI ID   WP_369778566.1    Uniprot ID   -
Organism   Streptomyces sp. R33     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5071961..5082938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J51_RS23330 (AB5J51_23365) - 5073260..5073997 (+) 738 WP_369778565.1 TetR/AcrR family transcriptional regulator -
  AB5J51_RS23335 (AB5J51_23370) - 5074090..5075628 (+) 1539 WP_133897773.1 MFS transporter -
  AB5J51_RS23340 (AB5J51_23375) - 5075812..5076579 (+) 768 WP_369780293.1 dioxygenase -
  AB5J51_RS23345 (AB5J51_23380) rpoS 5076961..5077938 (+) 978 WP_369778566.1 sigma-70 family RNA polymerase sigma factor Regulator
  AB5J51_RS23350 (AB5J51_23385) - 5078049..5078993 (-) 945 WP_053786969.1 YafY family protein -
  AB5J51_RS23355 (AB5J51_23390) - 5079057..5080628 (+) 1572 WP_369778567.1 MFS transporter -
  AB5J51_RS23360 (AB5J51_23395) pfkB 5080746..5081696 (+) 951 WP_369778568.1 1-phosphofructokinase -
  AB5J51_RS23365 (AB5J51_23400) - 5081715..5082497 (-) 783 WP_136225605.1 DUF6227 family protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36592.25 Da        Isoelectric Point: 4.9036

>NTDB_id=927664 AB5J51_RS23345 WP_369778566.1 5076961..5077938(+) (rpoS) [Streptomyces sp. R33]
MATRAVARRQSRGSARAVGGELADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGETEREGEAPSREELE
ALAAEGERAKEIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGRDPDHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDDEGETQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=927664 AB5J51_RS23345 WP_369778566.1 5076961..5077938(+) (rpoS) [Streptomyces sp. R33]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCAGGGGCAGCGCCCGCGCTGTGGGCGGGGAGCTCGCCGACCGCGACCT
GGTGGGCATGTACCTGGACGAGATCGCGCGTACCCCGCTGCTCGACGCGGCCAAGGAAGTGGAGCTCTCGCAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGCGAGACGGAGCGCGAGGGCGAGGCGCCGTCGCGCGAGGAGCTGGAG
GCCCTGGCCGCCGAGGGAGAGCGCGCCAAGGAGATCTTCATCCGCTCCAACCTCCGCCTCGTCGTGGCCGTCGCCCGCCG
CTACCCGCGCAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGGTGCGCGCCGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTCGGCCGGATCCGCCGGATCCAGCGGGAGTTCAACCGGGA
GAACGGCCGGGACCCGGACCACGCGGAGATCGCCGCCGAGCTGGACTCGACGGAGAAGCGCGTGGGCGACGTCCTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGTCCGTGGACGACGAGGGCGAGACGCAGTTCGGCGATCTCCTCGAGGACACC
TCCGCGATCTCGCCGGAGCAGTCCGTCCTGTCGCTCCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTGGACCA
GCGCACGGCGTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGGACCCTGACGGAGGTCGGCAAGCAGC
ACGGCCTGACGCGGGAGCGGATCCGCCAGATCGAGAAGCACGCGCTCCTCGAGCTGAAGCGCATGGCCCGCGACACGGGC
TTCGACGCAGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70, region 4 (Sigma70_r4)

(261-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39

92.308

0.36