Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8965_RS06035 Genome accession   NZ_AP028338
Coordinates   1112530..1113078 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain BCH-10307     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1107530..1118078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8965_RS06005 (B10307_11790) rseP 1107643..1108746 (+) 1104 WP_002777070.1 RIP metalloprotease RseP -
  R8965_RS06010 (B10307_11800) - 1108743..1108994 (+) 252 WP_048813181.1 hypothetical protein -
  R8965_RS06015 - 1108958..1109599 (+) 642 Protein_1163 DUF535 family protein -
  R8965_RS06020 (B10307_11830) - 1109592..1110593 (-) 1002 WP_002780256.1 sugar phosphate isomerase/epimerase -
  R8965_RS06025 (B10307_11840) - 1110593..1111864 (-) 1272 WP_002777080.1 MFS transporter -
  R8965_RS06030 (B10307_11850) rpsF 1112144..1112521 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  R8965_RS06035 (B10307_11860) ssb 1112530..1113078 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  R8965_RS06040 (B10307_11870) rpsR 1113089..1113349 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  R8965_RS06045 (B10307_11880) lon 1113405..1115780 (-) 2376 WP_317727853.1 endopeptidase La -
  R8965_RS06050 (B10307_11890) - 1115796..1116443 (-) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  R8965_RS06055 (B10307_11900) fliW 1116607..1116996 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  R8965_RS06060 (B10307_11910) proC 1116996..1117733 (+) 738 WP_002834520.1 pyrroline-5-carboxylate reductase Machinery gene
  R8965_RS06065 (B10307_11920) ctsT 1117730..1118035 (+) 306 WP_002834517.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=92759 R8965_RS06035 WP_002777084.1 1112530..1113078(+) (ssb) [Campylobacter coli strain BCH-10307]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=92759 R8965_RS06035 WP_002777084.1 1112530..1113078(+) (ssb) [Campylobacter coli strain BCH-10307]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379

Multiple sequence alignment