Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   VP466_RS01795 Genome accession   NZ_CP142895
Coordinates   380002..380328 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain B20AB10     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 375002..385328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP466_RS01775 (VP466_01775) - 375102..375731 (-) 630 WP_198745926.1 FHA domain-containing protein -
  VP466_RS01780 (VP466_01780) gspD 375772..378048 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  VP466_RS01785 (VP466_01785) - 378090..378926 (-) 837 WP_000870033.1 type II secretion system protein N -
  VP466_RS01790 (VP466_01790) gspN 378926..379669 (-) 744 WP_000730343.1 type II secretion system protein N -
  VP466_RS01795 (VP466_01795) hns 380002..380328 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  VP466_RS01800 (VP466_01800) - 380523..380963 (-) 441 WP_000661570.1 acyl-CoA thioesterase -
  VP466_RS01805 (VP466_01805) - 380971..382164 (-) 1194 WP_000681783.1 hypothetical protein -
  VP466_RS01810 (VP466_01810) - 382174..383013 (-) 840 WP_001230204.1 hypothetical protein -
  VP466_RS01815 (VP466_01815) - 383022..383789 (-) 768 WP_000897421.1 uroporphyrinogen-III synthase -
  VP466_RS01820 (VP466_01820) hemC 383794..384711 (-) 918 WP_031944971.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=927551 VP466_RS01795 WP_000801427.1 380002..380328(-) (hns) [Acinetobacter baumannii strain B20AB10]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=927551 VP466_RS01795 WP_000801427.1 380002..380328(-) (hns) [Acinetobacter baumannii strain B20AB10]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1