Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VXM67_RS06025 Genome accession   NZ_CP142890
Coordinates   1341067..1342434 (+) Length   455 a.a.
NCBI ID   WP_023378705.1    Uniprot ID   A0A964GNT9
Organism   Pseudomonas sp. Rh2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1336067..1347434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXM67_RS05995 (VXM67_05995) cydB 1336238..1337245 (+) 1008 WP_023378698.1 cytochrome d ubiquinol oxidase subunit II -
  VXM67_RS06000 (VXM67_06000) - 1337258..1337410 (+) 153 WP_023378699.1 DUF2474 domain-containing protein -
  VXM67_RS06005 (VXM67_06005) - 1337473..1338597 (-) 1125 WP_023378700.1 methyltransferase -
  VXM67_RS06010 (VXM67_06010) - 1338693..1339400 (-) 708 WP_027908037.1 autoinducer binding domain-containing protein -
  VXM67_RS06015 (VXM67_06015) - 1339621..1340397 (+) 777 WP_023378702.1 ferredoxin--NADP reductase -
  VXM67_RS06020 (VXM67_06020) mscL 1340471..1340890 (-) 420 WP_023378703.1 large-conductance mechanosensitive channel protein MscL -
  VXM67_RS06025 (VXM67_06025) radA 1341067..1342434 (+) 1368 WP_023378705.1 DNA repair protein RadA Machinery gene
  VXM67_RS06030 (VXM67_06030) - 1342566..1344086 (-) 1521 WP_367237559.1 nucleobase:cation symporter-2 family protein -
  VXM67_RS06035 (VXM67_06035) - 1344347..1344712 (-) 366 WP_023378708.1 PilZ domain-containing protein -
  VXM67_RS06040 (VXM67_06040) - 1344879..1346945 (+) 2067 WP_023378709.1 carbon starvation CstA family protein -
  VXM67_RS06045 (VXM67_06045) - 1346964..1347161 (+) 198 WP_013974210.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48610.05 Da        Isoelectric Point: 6.8985

>NTDB_id=927481 VXM67_RS06025 WP_023378705.1 1341067..1342434(+) (radA) [Pseudomonas sp. Rh2]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFTTSSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATSMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=927481 VXM67_RS06025 WP_023378705.1 1341067..1342434(+) (radA) [Pseudomonas sp. Rh2]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAATGGGCCGGCCAGTGCGGTGAGTG
TGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAAAGCGGCGGTGCAGCTGCACCGAGTGGCCGTACGGGATGGGCTG
GGCAGCAGGCTCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAATCCCGCGTTTCACCACCAGCAGCGCTGAGCTT
GACCGCGTACTGGGTGGCGGTCTGGTGGACGGCTCGGTGGTGCTGATCGGGGGCGATCCGGGTATCGGCAAGTCGACCAT
CCTGCTGCAGACCCTGTGCAACATTGCCACGTCCATGCCTGCTCTATACGTCACGGGCGAAGAGTCCCAGCAACAGGTGG
CCATGCGCTCGCGACGCCTGGGCTTGCCGCAGGACCAGCTCAAGGTGATGACCGAGACGTGCATCGAGACCATCATCGCC
ACTGCGCGCGTGGAAAAGCCTCGGGTGATGGTGATCGACTCGATCCAGACCATTTTCACCGAGCAATTGCAGTCGGCCCC
CGGTGGCGTGGCTCAGGTGCGCGAGAGTGCGGCGTTGCTGGTGCGCTATGCCAAGCAGAGTGGAACCGCGATTTTCCTGG
TCGGGCACGTCACCAAGGAAGGTTCGCTGGCTGGCCCACGGGTACTGGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGTGAGTCCGATGGCCGACTGCGTTTGTTGCGGGCGGTGAAGAATCGCTTCGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGACCGTGGCCTGAAGGAAGTCTCCAACCCGTCGGCGATTTTCCTCAACCGCGCCCAGGAAGAAGTGCCGGGCA
GTGTGGTCATGGCTACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCATTGGTCGACGACAGCCACCTGGCC
AACCCGCGCCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGTTGCTGGCAGTGTTGCATCGTCATGGCGGTAT
CCCTACGCACGATCAGGATGTGTTCCTTAACGTGGTGGGTGGGGTCAAGGTGCTGGAGACAGCCTCCGACCTGGCCTTGT
TGGCGGCGGTGATGTCCAGCTTGCGCAATCGCCCGCTTGCCCATGGCTTGCTGGTATTCGGTGAAATCGGCCTGTCCGGC
GAGGTTCGCCCGGTGCCCAGTGGCCAGGAACGCCTGAAAGAGGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAGGCGCCGGCAGGATTGCAGATAATTGCAGTGACACGCCTGGAACAGGCACTGGACGCACTTT
TCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

100

0.486
  radA Streptococcus pneumoniae Rx1

45.534

100

0.459
  radA Streptococcus pneumoniae D39

45.534

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.534

100

0.459
  radA Streptococcus pneumoniae R6

45.534

100

0.459
  radA Streptococcus mitis NCTC 12261

45.316

100

0.457
  radA Streptococcus mitis SK321

45.495

100

0.455