Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VXM68_RS05585 Genome accession   NZ_CP142884
Coordinates   1327784..1329169 (+) Length   461 a.a.
NCBI ID   WP_293956209.1    Uniprot ID   -
Organism   Sphingobacterium sp. R2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1322784..1334169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXM68_RS05565 (VXM68_05535) xseB 1322982..1323203 (-) 222 WP_294185581.1 exodeoxyribonuclease VII small subunit -
  VXM68_RS05570 (VXM68_05540) xseA 1323244..1324530 (-) 1287 WP_294185580.1 exodeoxyribonuclease VII large subunit -
  VXM68_RS05575 (VXM68_05545) - 1324760..1326484 (+) 1725 WP_367210664.1 serine hydrolase domain-containing protein -
  VXM68_RS05580 (VXM68_05550) - 1326481..1327641 (+) 1161 WP_367210665.1 dipeptidase -
  VXM68_RS05585 (VXM68_05555) radA 1327784..1329169 (+) 1386 WP_293956209.1 DNA repair protein RadA Machinery gene
  VXM68_RS05590 (VXM68_05560) - 1329355..1330038 (-) 684 WP_294185576.1 peroxiredoxin -
  VXM68_RS05595 (VXM68_05565) - 1330111..1331259 (+) 1149 WP_367210666.1 methionine aminotransferase -
  VXM68_RS05600 (VXM68_05570) nagB 1331404..1333332 (+) 1929 WP_367210667.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50560.84 Da        Isoelectric Point: 7.0182

>NTDB_id=927453 VXM68_RS05585 WP_293956209.1 1327784..1329169(+) (radA) [Sphingobacterium sp. R2]
MAKSKSAYFCQNCGYESPKWMGQCPSCKQWNSFVEEVVEKGSSKVPEWRSSTTGGNTKRANKAAIIHEIVYQDESRISTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQIETVQPNVIVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDEPVSGVSIASMLEGMRPMMIEVQALVSN
SAFGTAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVVVAIISSQQDIPIRSNLTFAGEV
GLSGEIRAVNRIEQRIQEAEKLGFDGIFISKFNTKGLDAKKYNIAIRPVAKLEDIFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=927453 VXM68_RS05585 WP_293956209.1 1327784..1329169(+) (radA) [Sphingobacterium sp. R2]
ATGGCAAAATCAAAATCAGCATACTTCTGTCAAAACTGTGGCTATGAATCTCCCAAATGGATGGGACAATGTCCTTCCTG
TAAGCAATGGAATAGCTTTGTTGAAGAAGTGGTCGAAAAAGGGAGTTCAAAAGTCCCCGAATGGCGTAGTTCTACAACTG
GTGGCAATACGAAAAGGGCCAATAAAGCAGCTATTATTCACGAAATTGTTTACCAAGATGAGTCTCGAATATCCACGCCT
GATCAGGAGTTTAACCGGGTTCTTGGCGGAGGCATTGTTCCGGGGTCACTGGTGCTTATCGGTGGAGAACCTGGGATTGG
AAAGTCAACGTTAATGTTACAGTTGGCTTTATCTATTCCACAAGTCAAGACACTTTATATTTCTGGGGAGGAAAGTGAGC
AGCAGATCAAGATGCGGGCCGAGCGATTATCACAATCATCCAAAGCGAATTGCTATATCCTGACGGAAACATCCACGCAA
AATATTTTTAAGCAGATCGAGACGGTACAGCCCAATGTCATTGTTATTGACTCGATACAGACATTACATTCCGCACAGAT
TGAATCCGCTCCGGGTTCGGTTTCTCAGGTTCGCGAATGTACCGCAGAATTGTTGCGGTTTGCCAAGGAGACGAGCACTC
CCGTCTTTATTGTGGGCCATATCACCAAAGATGGATCGATTGCTGGTCCCAAGGTTTTAGAGCATATGGTGGATACCGTT
CTCCAATTTGAAGGCGATCGTCACCATGTCTATCGAATTTTGCGCGCCGTAAAAAATCGCTTTGGATCTGCTTCAGAACT
GGGAATTTATGAAATGCAGGGGTCGGGGTTGCGGGAAGTGTCCAATCCTTCGGAGATTATGATTTCGCAACGCGACGAAC
CGGTTAGTGGAGTTTCCATTGCATCCATGCTCGAAGGGATGCGGCCGATGATGATCGAGGTTCAGGCACTGGTCAGTAAC
TCCGCATTTGGTACAGCACAACGCTCTTCCACAGGGTACGACACGAAACGGTTAAATATGCTGCTGGCTGTTTTGGAGAA
ACGCTTTGGCTTTAGGCTGAGCGCACAGGATGTATTCCTGAATATCGCCGGTGGACTGCGTGTTGAAGATCCTGCAATCG
ATCTAGCCGTAGTCGTAGCGATTATTTCTTCACAGCAAGATATACCTATTCGCTCCAATCTGACTTTTGCAGGTGAGGTT
GGCTTATCGGGCGAGATCAGGGCTGTAAATCGAATTGAACAAAGAATACAAGAGGCTGAAAAGTTGGGTTTTGATGGTAT
ATTTATTTCTAAATTCAATACCAAAGGCCTCGATGCGAAAAAATATAATATTGCTATTCGGCCTGTCGCCAAGTTAGAGG
ATATATTCAGTGCCTTGTTTGGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

AAA domain (AAA_25)

(71-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

52.495

100

0.525
  radA Streptococcus pneumoniae Rx1

52.495

100

0.525
  radA Streptococcus pneumoniae D39

52.495

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.495

100

0.525
  radA Streptococcus mitis NCTC 12261

52.495

100

0.525
  radA Streptococcus mitis SK321

52.278

100

0.523
  radA Bacillus subtilis subsp. subtilis str. 168

53.273

96.095

0.512