Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VXK30_RS08950 Genome accession   NZ_CP142860
Coordinates   1791928..1793298 (+) Length   456 a.a.
NCBI ID   WP_275715843.1    Uniprot ID   -
Organism   Caproiciproducens sp. CPB-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1786928..1798298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXK30_RS08900 (VXK30_08900) lysA 1787200..1788498 (+) 1299 WP_275715833.1 diaminopimelate decarboxylase -
  VXK30_RS08905 (VXK30_08905) - 1788595..1788897 (+) 303 WP_038324176.1 YerC/YecD family TrpR-related protein -
  VXK30_RS08910 (VXK30_08910) - 1788894..1789637 (+) 744 WP_275715837.1 class I SAM-dependent methyltransferase -
  VXK30_RS08915 (VXK30_08915) hslO 1789651..1790538 (+) 888 WP_275715839.1 Hsp33 family molecular chaperone HslO -
  VXK30_RS08945 (VXK30_08945) - 1791134..1791862 (+) 729 WP_275715841.1 N-acetylmuramoyl-L-alanine amidase -
  VXK30_RS08950 (VXK30_08950) radA 1791928..1793298 (+) 1371 WP_275715843.1 DNA repair protein RadA Machinery gene
  VXK30_RS08955 (VXK30_08955) - 1793555..1794535 (+) 981 WP_275715845.1 HlyD family efflux transporter periplasmic adaptor subunit -
  VXK30_RS08960 (VXK30_08960) - 1794528..1795718 (+) 1191 WP_275715847.1 ABC transporter permease -
  VXK30_RS08965 (VXK30_08965) - 1795723..1796511 (+) 789 WP_275715849.1 DUF6873 family GME fold protein -
  VXK30_RS08970 (VXK30_08970) - 1796604..1797629 (+) 1026 WP_275715851.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49139.25 Da        Isoelectric Point: 6.1779

>NTDB_id=927446 VXK30_RS08950 WP_275715843.1 1791928..1793298(+) (radA) [Caproiciproducens sp. CPB-2]
MASKSKSIYICSECGFESAKWFGKCPGCGQWNTMTEEIRESTAQKNSAGAARKNTVPVSINEISTAEEARYHTGLTELDR
VLGGGIVKGSLILISGEPGIGKSTILLQICEYLGQSLKILYVSGEESNRQIKLRAARLGVQSDNLYILTETDIQCVIEQM
RAQKPDLVMIDSIQTMNDTDLNSSPGSVTQVRECTNAVMHTAKALEIPTILVGHVNKDGAIAGPKVLEHIVDAVLYFEGD
RQMSYRILRAAKNRYGSTNEIGVFDMGDNGLHQVDNPSLALLDGRPKNVSGTCVTCVIEGSRPILAEIQGLATTTGFGNP
RRMSTGFDYNRMSLLLAVLEKRAGYYFSNLDAYVNVVGGLRLDEPAADLAVAMSLVSSLKDIPVSDDAIVFGEIGLAGEI
RAVTHVDARISEAARLGFTKCILPFHSLKQANVKGNGIQLIGVKGVREAFEALSGC

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=927446 VXK30_RS08950 WP_275715843.1 1791928..1793298(+) (radA) [Caproiciproducens sp. CPB-2]
ATGGCTTCCAAATCAAAAAGTATTTATATCTGCTCCGAGTGCGGGTTTGAATCTGCAAAATGGTTCGGAAAATGTCCCGG
CTGCGGGCAGTGGAACACGATGACAGAAGAAATCAGGGAATCGACCGCCCAAAAGAATTCGGCGGGTGCGGCGCGCAAAA
ATACCGTCCCCGTTTCCATCAATGAAATCAGTACCGCGGAGGAAGCCCGTTATCATACCGGTTTAACGGAACTGGACAGA
GTGCTCGGCGGCGGGATTGTAAAAGGCTCCCTGATTTTGATCAGCGGAGAGCCGGGAATCGGCAAATCGACGATCCTTTT
GCAGATCTGCGAATATCTCGGGCAATCCCTGAAGATCCTATATGTATCGGGAGAAGAATCAAACCGGCAAATAAAGCTCC
GTGCGGCCCGTCTGGGCGTTCAAAGCGATAATCTCTATATTCTGACCGAAACGGACATTCAATGCGTTATAGAGCAAATG
AGAGCCCAAAAACCCGATCTGGTGATGATCGATTCCATCCAGACGATGAATGATACCGATCTGAATTCGTCGCCCGGCAG
CGTCACACAGGTGCGGGAATGCACCAACGCCGTGATGCACACCGCAAAAGCGCTGGAAATCCCAACCATTCTCGTCGGCC
ATGTCAATAAGGACGGGGCCATCGCGGGACCGAAGGTGCTGGAGCATATCGTCGACGCGGTGCTTTATTTTGAGGGGGAC
CGCCAAATGTCCTACCGGATTCTGCGGGCCGCAAAGAACAGATACGGTTCCACCAATGAAATCGGCGTGTTTGACATGGG
CGACAATGGGCTTCATCAGGTGGACAACCCTTCGCTCGCTCTGCTGGACGGAAGGCCGAAAAATGTATCGGGCACCTGCG
TCACCTGCGTAATAGAAGGTTCCCGCCCGATTCTGGCCGAAATACAGGGACTTGCAACGACGACCGGCTTTGGAAATCCC
AGAAGGATGTCGACCGGTTTTGATTACAACCGAATGTCTCTGCTGCTTGCCGTACTTGAAAAACGGGCGGGATACTATTT
TTCCAATCTGGACGCTTATGTCAATGTTGTAGGAGGATTAAGACTGGACGAGCCCGCGGCCGACCTTGCGGTAGCCATGT
CGCTCGTGTCCAGTCTGAAGGATATCCCCGTCAGCGATGACGCCATTGTATTCGGCGAGATCGGCCTTGCCGGGGAAATA
CGCGCCGTTACCCATGTCGACGCCAGAATCAGCGAGGCTGCCCGGCTGGGCTTTACAAAATGCATTTTACCCTTTCACAG
CCTGAAGCAGGCCAACGTCAAAGGGAACGGCATTCAATTGATCGGGGTCAAAGGCGTGAGGGAGGCGTTTGAGGCTTTAT
CTGGTTGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(343-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.655

99.123

0.522
  radA Streptococcus pneumoniae Rx1

47.672

98.904

0.471
  radA Streptococcus pneumoniae D39

47.672

98.904

0.471
  radA Streptococcus pneumoniae R6

47.672

98.904

0.471
  radA Streptococcus pneumoniae TIGR4

47.672

98.904

0.471
  radA Streptococcus mitis NCTC 12261

47.672

98.904

0.471
  radA Streptococcus mitis SK321

47.672

98.904

0.471