Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   VXJ98_RS07375 Genome accession   NZ_CP142855
Coordinates   1472125..1472841 (+) Length   238 a.a.
NCBI ID   WP_002455088.1    Uniprot ID   -
Organism   Staphylococcus hominis strain Sh8213     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1467125..1477841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXJ98_RS07350 (VXJ98_07350) - 1467848..1468471 (+) 624 WP_017175275.1 nitroreductase family protein -
  VXJ98_RS07355 (VXJ98_07355) - 1468602..1469387 (+) 786 WP_017175276.1 carbon-nitrogen family hydrolase -
  VXJ98_RS07360 (VXJ98_07360) - 1470089..1470655 (+) 567 WP_017175277.1 accessory gene regulator AgrB -
  VXJ98_RS07365 (VXJ98_07365) agrD 1470658..1470798 (+) 141 WP_017175278.1 cyclic lactone autoinducer peptide AgrD -
  VXJ98_RS07370 (VXJ98_07370) agrC 1470823..1472112 (+) 1290 WP_017175279.1 quorum-sensing sensor histidine kinase AgrC -
  VXJ98_RS07375 (VXJ98_07375) agrA 1472125..1472841 (+) 717 WP_002455088.1 quorum-sensing response regulator AgrA Regulator
  VXJ98_RS07380 (VXJ98_07380) - 1472892..1473851 (-) 960 WP_017175280.1 carbohydrate kinase family protein -
  VXJ98_RS07385 (VXJ98_07385) - 1473852..1475339 (-) 1488 WP_017175281.1 sucrose-6-phosphate hydrolase -
  VXJ98_RS07390 (VXJ98_07390) - 1475594..1476838 (-) 1245 WP_017175282.1 ammonium transporter -
  VXJ98_RS07395 (VXJ98_07395) - 1476948..1477106 (-) 159 Protein_1410 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27858.75 Da        Isoelectric Point: 5.2104

>NTDB_id=927425 VXJ98_RS07375 WP_002455088.1 1472125..1472841(+) (agrA) [Staphylococcus hominis strain Sh8213]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEIIEQSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPNQLKTRIIDCIETAHTRLKLLSKESNVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVVNRHNIDSVDSKERIVTFRNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=927425 VXJ98_RS07375 WP_002455088.1 1472125..1472841(+) (agrA) [Staphylococcus hominis strain Sh8213]
ATGAAAATATTCATTTGTGAAGACGATGTGAAACAACGTGAAAATATGGTTTCAATTATTAATAACTATATAATGATTGA
AGAAAAACCGATGGAAATAGCGTTAGCGACAGATGATCCTTATGAAATTATTGAACAGTCAAAAGAAATGAATGATGTTG
GATGTTATTTTTTAGATATACAATTAGAAGCTGATATTAACGGTATTAAACTTGGAAGTGAAATTCGAAAGTATGATCCT
ATTGGGAATATCATCTTTGTTACAAGTCATAGTGAACTCACTTACCTAACATTTGTCTATAAGGTATCTGCAATGGATTT
TATTTTTAAAGATGATCCTAATCAACTTAAAACGCGAATAATAGATTGTATTGAAACTGCTCATACACGTTTAAAATTAC
TTTCAAAAGAAAGTAATGTTGAGACAATTGAATTAAAGCGTGGTAGCAATTCAATATATGTACAATATGATGATGTCATG
TTCTTTGAATCGTCTACAAAATCCCATCGTTTAATTGCGCATCTTGATAACCGTCAGATTGAATTCTACGGAAATCTTAA
AGAATTAGCACAACTCGATGATCGTTTTTTCAGATGTCACAATAGTTTTGTTGTAAATCGCCATAATATCGATTCAGTCG
ATTCTAAAGAACGAATTGTAACTTTCAGAAATGGTGAGCATTGCTATGCCTCTGTACGTAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.395

100

0.874