Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VYN45_RS04490 Genome accession   NZ_CP142852
Coordinates   987777..989141 (-) Length   454 a.a.
NCBI ID   WP_009873708.1    Uniprot ID   A0A0H3MH33
Organism   Chlamydia trachomatis strain LGV II 434     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 982777..994141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYN45_RS04475 pknD 983475..986279 (+) 2805 WP_009873709.1 serine/threonine-protein kinase PknD -
  VYN45_RS04480 - 986332..986680 (-) 349 Protein_851 hypothetical protein -
  VYN45_RS04485 - 987074..987799 (-) 726 WP_009871647.1 hydroxymethylbilane synthase -
  VYN45_RS04490 radA 987777..989141 (-) 1365 WP_009873708.1 DNA repair protein RadA Machinery gene
  VYN45_RS04495 rnc 989125..989820 (-) 696 WP_009872536.1 ribonuclease III -
  VYN45_RS04500 - 989929..990396 (+) 468 WP_009872535.1 DUF5070 domain-containing protein -
  VYN45_RS04505 - 990548..992329 (+) 1782 WP_012263634.1 phospho-sugar mutase -
  VYN45_RS04510 - 992461..993081 (+) 621 WP_009873706.1 superoxide dismutase -
  VYN45_RS04515 accD 993152..994078 (+) 927 WP_009873705.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49811.30 Da        Isoelectric Point: 7.5070

>NTDB_id=927394 VYN45_RS04490 WP_009873708.1 987777..989141(-) (radA) [Chlamydia trachomatis strain LGV II 434]
MTTKIKTQWTCTECGTHSPKWLGQCSGCLQWNTLVEERTAPKLNTSSYSSSSSIPIPLNNVEFQEEIRIHTQAQGWNRLL
GGGTVRGSLALLGGEPGIGKSTLLLQISSQFAAAGHKVLYVCGEESVSQTSLRAQRLQISSNNIFLFPETNLEDIKQQID
NIAPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNV
HANYRMIRSVKNRFGPTNELLILSMHTDGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLVEVQALVSSSPFSNPV
RKTSGFDPNRFSLLLAVLEKRANIKLYTSDVFLSIAGGLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIR
HVSHMEHRIKESIIMGFKGIVMPFGQIKGLPKEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=927394 VYN45_RS04490 WP_009873708.1 987777..989141(-) (radA) [Chlamydia trachomatis strain LGV II 434]
ATGACAACAAAAATTAAAACACAGTGGACGTGTACAGAATGTGGCACACATTCTCCAAAATGGTTGGGACAATGTTCTGG
ATGTCTCCAGTGGAATACACTAGTCGAAGAAAGAACAGCTCCTAAACTAAACACATCTTCTTACTCCTCTAGCTCTTCTA
TTCCCATACCACTAAACAATGTGGAATTTCAGGAAGAAATACGAATTCATACCCAAGCTCAAGGCTGGAATCGCCTTCTA
GGAGGAGGAACGGTCCGAGGTAGCCTCGCTCTATTGGGAGGAGAGCCTGGCATAGGAAAGTCTACTTTACTACTTCAAAT
TTCCTCACAATTCGCGGCAGCTGGTCATAAAGTGTTGTACGTTTGCGGAGAAGAATCCGTGTCCCAAACTTCATTACGAG
CCCAACGCCTGCAAATCTCTAGCAACAATATTTTCCTATTCCCAGAAACAAATCTTGAAGACATCAAACAACAGATTGAT
AACATTGCTCCAGACATATTAGTTATCGACTCTATCCAGATCATTTTTTCTCCATCCTTAAGCTCTGCTCCAGGATCGGT
TGCTCAAGTGAGAGAAACGACCGCAGAGCTCATGCATATAGCAAAACAAAAACAGATCACAACCTTTATTATTGGACATG
TCACTAAATCTGGAGAAATCGCTGGCCCACGTATCCTAGAACACTTAGTAGACACTGTTCTCTATTTTGAAGGTAATGTG
CATGCTAATTACCGTATGATTCGCTCTGTTAAGAATCGTTTCGGCCCAACCAATGAATTATTAATTTTATCCATGCATAC
AGATGGATTACGCGAAGTAGAAAATCCGTCAGGTCTCTTTCTACAAGAAAAAATTGTAGAAACTACAGGCTCTACCATTA
TCCCTATTGTAGAAGGCTCTGAAACTCTTCTTGTAGAAGTTCAGGCTCTCGTTTCTTCATCCCCATTTTCTAATCCTGTA
CGAAAAACATCCGGATTTGATCCAAACCGATTTTCTTTACTCTTAGCTGTTTTAGAAAAAAGAGCGAATATTAAATTATA
TACATCCGATGTCTTCCTTTCTATCGCTGGAGGCTTGAAAATCACACAACCTTCGGCAGACTTAGGAGCGGTGTTATCGG
TGGTGTCTTCCCTATATAACCGCTATTTACCTAAAAATTATACCTATACTGGAGAGATCGGCCTAGGAGGAGAAATTCGT
CACGTTTCACACATGGAACACCGCATAAAAGAAAGCATTATTATGGGGTTTAAAGGTATCGTGATGCCTTTTGGGCAGAT
AAAAGGCTTACCTAAAGAATTTCTGGATCAAATTGATATTATTGGAGTAAAAACAATTAAAGATGCTGTCCGCTTACTAC
AATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(76-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MH33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.493
  radA Streptococcus pneumoniae Rx1

47.124

99.559

0.469
  radA Streptococcus pneumoniae D39

47.124

99.559

0.469
  radA Streptococcus pneumoniae R6

47.124

99.559

0.469
  radA Streptococcus pneumoniae TIGR4

47.124

99.559

0.469
  radA Streptococcus mitis NCTC 12261

46.903

99.559

0.467
  radA Streptococcus mitis SK321

46.444

99.119

0.46