Detailed information NTG0927389

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: VWI91_RS19340
• Genome accession: NZ_CP142851
• Coordinates: 4003310..4004749 (+)
• Length: 479 a.a.
• NCBI ID: WP_050457416.1
• Uniprot ID: -
• Organism: Bordetella pertussis strain F
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3998310..4009749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VWI91_RS19325	-	3999193..4000446 (+)	1254	WP_010929638.1	amidase	-
VWI91_RS19330	leuA	4000537..4002237 (-)	1701	WP_010929639.1	2-isopropylmalate synthase	-
VWI91_RS19335	-	4002664..4003311 (-)	648	WP_010929640.1	hypothetical protein	-
VWI91_RS19340	rpoN/rpoN1	4003310..4004749 (+)	1440	WP_050457416.1	RNA polymerase factor sigma-54	Machinery gene
VWI91_RS19345	-	4004842..4005144 (+)	303	WP_003815905.1	bacterioferritin-associated ferredoxin	-
VWI91_RS19350	-	4005172..4006050 (-)	879	WP_010929512.1	LysR substrate-binding domain-containing protein	-
VWI91_RS19355	-	4006158..4007086 (+)	929	Protein_3798	DMT family transporter	-
VWI91_RS19360	-	4007317..4008267 (-)	951	WP_005013747.1	IS481-like element IS481 family transposase	-
VWI91_RS19365	thpR	4008360..4008926 (-)	567	WP_049805779.1	RNA 2',3'-cyclic phosphodiesterase	-

Sequence

Protein

• Length: 479 a.a.
• Molecular weight: 52334.53 Da
• Isoelectric Point: 4.8120

>NTDB_id=927389 VWI91_RS19340 WP_050457416.1 4003310..4004749(+) (rpoN/rpoN1) [Bordetella pertussis strain F]
MQNIVPMTRPALELHPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAENPLLERDEDPAREEQADPEREASVEADEAP
DTELRLDEMPGSGGVLPDDDSDLPQAARPDTLREHLLGQLALTRAAPRDAALCGLLIDELDENGYLDSPLEEILTWLPAE
VQADLDELRAALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLACARRICAQHLPLLATGNVARVREAVQ
CDEAVVRAAHALIPRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQAVLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQA
QLQQARWMIRNVEQRFDTILRVAQAIVAHQQAFFTQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKR
FFGAGVSTDGGDATSATAVQAVIRQMVADEDRAKPLSDSQIMQRLADQGIVIARRTVAKYREALRIAPATLRKAHAAGR

Nucleotide

• Length: 1440 bp

>NTDB_id=927389 VWI91_RS19340 WP_050457416.1 4003310..4004749(+) (rpoN/rpoN1) [Bordetella pertussis strain F]
ATGCAAAATATTGTACCTATGACTCGTCCCGCGCTAGAACTTCATCCTGGTCAACATTTGACGTTGACCCCTCAACTGCA
ACAGTCGATCCGGCTGTTGCAGCTGTCGTCGCTGGAGCTGGAGGCCGAACTGTCGCAGGCGCTGGCCGAGAATCCGTTGC
TGGAACGCGACGAAGATCCGGCGCGCGAGGAGCAGGCCGACCCCGAGCGCGAGGCCTCGGTCGAGGCCGACGAGGCGCCG
GATACCGAACTGCGCCTGGACGAGATGCCCGGTTCGGGCGGCGTTCTTCCCGACGACGACAGCGACCTGCCGCAGGCGGC
GCGCCCGGATACCCTGCGCGAACACCTGCTGGGGCAGCTGGCGCTGACGCGCGCCGCGCCGCGCGATGCGGCGCTGTGCG
GTCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGATTCGCCCCTGGAAGAGATCCTGACCTGGCTGCCGGCCGAG
GTGCAGGCCGACCTGGACGAGCTGCGCGCGGCGCTGGCATTGCTGCAGTCGTTCGATCCGGCAGGCATCGGCGCGCGCGA
CATGGCCGAATGCCTGCAGCTGCAGTTGCGCCAGCCCGATCCGGCGCGCCTGCCCGAGGCGGCCGATGCCGAGGTGCTGG
CCTGTGCGCGGCGCATCTGCGCGCAGCATCTGCCCTTGCTGGCCACCGGCAACGTGGCCCGCGTGCGCGAGGCCGTGCAA
TGCGACGAGGCGGTCGTGCGCGCCGCGCATGCGCTGATCCCGCGCCTGGAACCGCGGCCGGGCCGCGCCTGGACGGTGCC
GGCGGCCGATTACGCCATTCCCGACGTGATCGTGCGCCGTACCCGCCAGGGCTGGCAGGCGGTGCTCAACAGCGCCGTCG
TGCCGCGGCTGCATGTCAATGCCGTCTATGCGCAAGTGCTGGGCGGCCAGCGCCAGGGCGGCAACGCCGGCCTGCAGGCG
CAGCTGCAACAGGCGCGCTGGATGATACGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCGCAGGCGATCGT
GGCGCATCAGCAGGCGTTCTTCACCCAGGGGCCGGCGGCCATGCGGCCGCTGATCCTCAAGGACATCGCCGGCGAACTGG
ATCTGCACGAATCGACCATTTCGCGCGCGACGACGCAGAAGTACATGCTCACACCGTTCGGTACGCTGGAGCTCAAGCGC
TTCTTTGGCGCGGGCGTGTCCACCGATGGCGGAGACGCCACCTCGGCCACCGCGGTGCAGGCGGTGATCCGCCAGATGGT
GGCCGACGAGGATCGCGCCAAGCCCTTGTCGGACAGCCAGATCATGCAGCGCCTGGCCGACCAGGGCATCGTCATTGCCC
GCCGCACGGTGGCCAAGTACCGCGAGGCGCTGCGGATTGCGCCAGCGACGCTGCGCAAGGCCCACGCCGCGGGTCGTTAG

Domains

Predicted by InterproScan.

• Sigma-54 factor, core binding domain (Sigma54_CBD) (106-303)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-55)

• Sigma-54, DNA binding domain (Sigma54_DBD) (318-473)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	48.221	100	0.509