Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VJ374_RS11130 Genome accession   NZ_CP142850
Coordinates   2092945..2094747 (-) Length   600 a.a.
NCBI ID   WP_329468803.1    Uniprot ID   -
Organism   Exiguobacterium sp. 9-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2087945..2099747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ374_RS11105 (VJ374_11105) - 2088800..2089684 (-) 885 WP_308101794.1 RluA family pseudouridine synthase -
  VJ374_RS11110 (VJ374_11110) - 2089710..2090513 (-) 804 WP_056062419.1 NAD kinase -
  VJ374_RS11115 (VJ374_11115) - 2090524..2091168 (-) 645 WP_035396676.1 GTP pyrophosphokinase family protein -
  VJ374_RS11120 (VJ374_11120) - 2091286..2091846 (+) 561 WP_052019082.1 CYTH domain-containing protein -
  VJ374_RS11125 (VJ374_11125) - 2091941..2092732 (+) 792 WP_050677567.1 DsbA family protein -
  VJ374_RS11130 (VJ374_11130) pepF 2092945..2094747 (-) 1803 WP_329468803.1 oligoendopeptidase F Regulator
  VJ374_RS11135 (VJ374_11135) - 2094812..2095762 (-) 951 WP_329468804.1 competence protein CoiA family protein -
  VJ374_RS11140 (VJ374_11140) cls 2095781..2097292 (-) 1512 WP_035406614.1 cardiolipin synthase -
  VJ374_RS11145 (VJ374_11145) - 2097363..2098085 (+) 723 WP_035406611.1 SDR family oxidoreductase -
  VJ374_RS11150 (VJ374_11150) mecA 2098148..2098774 (-) 627 WP_035406608.1 adaptor protein MecA -
  VJ374_RS11155 (VJ374_11155) spxA 2098946..2099344 (-) 399 WP_012370920.1 transcriptional regulator SpxA -
  VJ374_RS11160 (VJ374_11160) - 2099517..2099654 (-) 138 WP_023468890.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68340.70 Da        Isoelectric Point: 4.5563

>NTDB_id=927363 VJ374_RS11130 WP_329468803.1 2092945..2094747(-) (pepF) [Exiguobacterium sp. 9-2]
MAEVLTRQDVDVSETWNLESIYASNEAWEEEFESMKAMLPLLVEYKGRLGQSADTLYEGLQLRDEVSRRLYKLYTYAHMR
YDENTADSFYQAMNDRARTLASQIGATLAFMTPELLAVPETTIEAYLNENADLAMYRHAFDELNQEREHVLTEAEEAILA
KAGEVLGQSGTTFGMLNNADLTFPKIKGEDGEETELTHGRFITFLESSDRSVREAAFKAMYGTYAKYTNTLASTLAGSVK
KDNFYADVRKFPSARAAALHGNAIPESVYDGLVEAVHEHLPLLHRYVALRKRVLGLDELHMYDMYTPLVSEVEMKVSYEE
AKQLMVEGLAPLGAEYKHILEEGLSERWVDVRETRGKRSGAYSSGAYDTQPFILMNWQDNINNLFTLAHEFGHSVHSYYT
RKSQPYPYGDYSIFVAEVASTTNEALLNDYLLKKVTDRKEKLYLLNNQLETFRGTLFRQTMFAEFEHAIHDAARLGQSLT
PEFLTSTYYALNQKYFGEEIVLDEEIGLEWARIPHFYYNYYVYQYATGISAAAALTDQILEEGQPAVERYINNFLKAGSS
DYPIEVLKAAGVDMTTKAPVEAALRQFERVLDEFEALLAE

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=927363 VJ374_RS11130 WP_329468803.1 2092945..2094747(-) (pepF) [Exiguobacterium sp. 9-2]
ATGGCAGAAGTATTAACACGTCAAGATGTTGACGTTTCAGAAACTTGGAATCTAGAATCGATTTATGCATCAAACGAAGC
GTGGGAAGAAGAATTTGAATCGATGAAAGCGATGCTTCCATTACTCGTCGAGTATAAGGGTCGTCTTGGACAAAGTGCGG
ACACACTCTATGAAGGGTTACAGTTACGAGACGAAGTCTCAAGACGTCTTTATAAGCTCTATACATACGCGCACATGCGT
TACGACGAAAATACAGCGGATAGCTTCTATCAAGCCATGAACGACCGTGCTCGGACGCTTGCGTCACAAATCGGAGCCAC
ACTTGCTTTCATGACACCGGAATTGTTAGCTGTACCTGAAACAACGATAGAAGCGTATCTTAATGAGAATGCAGACCTTG
CGATGTACCGTCATGCATTTGATGAGTTGAACCAAGAACGCGAGCATGTGTTGACGGAAGCGGAAGAAGCGATTCTAGCG
AAGGCGGGAGAAGTTCTCGGTCAATCCGGTACGACATTCGGTATGCTGAATAATGCAGATTTGACATTCCCGAAAATTAA
GGGGGAAGACGGGGAAGAGACAGAATTGACACATGGTCGTTTCATCACATTCCTTGAATCATCTGATCGTTCGGTGCGTG
AAGCCGCATTTAAAGCGATGTACGGAACGTATGCGAAATACACGAATACGCTCGCCTCAACTCTTGCTGGGTCAGTTAAG
AAAGACAACTTCTATGCAGATGTTCGGAAGTTCCCTTCGGCACGCGCGGCAGCCTTACATGGTAATGCAATCCCTGAATC
CGTTTATGATGGGTTGGTTGAAGCGGTACATGAGCACTTACCATTGCTTCATCGCTATGTTGCCTTACGTAAACGGGTCC
TCGGTCTTGATGAGTTACACATGTACGATATGTATACCCCCCTCGTTTCTGAGGTCGAGATGAAGGTCTCTTATGAAGAA
GCGAAACAATTGATGGTCGAAGGGCTCGCGCCGCTTGGAGCAGAATATAAACATATTCTCGAAGAAGGGTTGTCTGAGCG
CTGGGTTGATGTCCGGGAAACGCGTGGTAAACGGAGTGGAGCATACTCTTCTGGTGCTTACGATACACAACCATTCATTT
TGATGAACTGGCAAGATAACATCAATAATCTCTTTACGCTCGCACATGAATTCGGACATTCGGTTCATAGCTACTACACG
CGGAAATCTCAACCATATCCATATGGCGATTATTCAATCTTCGTCGCTGAAGTCGCTTCAACGACAAATGAAGCGTTGTT
AAACGACTATCTATTGAAGAAAGTGACGGATCGTAAAGAAAAACTTTATCTATTAAACAATCAACTTGAAACATTCCGCG
GTACATTGTTCCGACAAACGATGTTCGCTGAGTTCGAACATGCGATTCATGATGCGGCGCGTCTTGGACAATCGTTGACA
CCAGAATTCTTGACGTCAACGTATTATGCCTTGAATCAAAAATACTTCGGAGAAGAGATTGTATTAGATGAAGAGATTGG
TTTGGAGTGGGCTCGGATTCCACACTTCTATTACAATTACTATGTCTATCAGTATGCAACAGGCATTTCGGCGGCTGCTG
CTTTGACGGATCAAATCCTAGAAGAAGGACAACCGGCTGTAGAACGTTACATCAATAATTTCTTAAAAGCGGGATCAAGC
GATTATCCAATCGAAGTACTAAAAGCTGCTGGTGTTGATATGACAACAAAAGCACCAGTTGAAGCAGCACTTCGTCAATT
TGAACGTGTCCTAGATGAATTCGAAGCTTTATTAGCAGAGTGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-585)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.658

97.333

0.483