Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VJ374_RS04825 Genome accession   NZ_CP142850
Coordinates   934060..935766 (+) Length   568 a.a.
NCBI ID   WP_290748949.1    Uniprot ID   -
Organism   Exiguobacterium sp. 9-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 929060..940766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ374_RS04800 (VJ374_04800) xseB 929538..929759 (+) 222 WP_023467583.1 exodeoxyribonuclease VII small subunit -
  VJ374_RS04805 (VJ374_04805) - 929756..930625 (+) 870 WP_329470346.1 farnesyl diphosphate synthase -
  VJ374_RS04810 (VJ374_04810) dxs 930744..932630 (+) 1887 WP_056060225.1 1-deoxy-D-xylulose-5-phosphate synthase -
  VJ374_RS04815 (VJ374_04815) - 932637..933443 (+) 807 WP_214855083.1 TlyA family RNA methyltransferase -
  VJ374_RS04820 (VJ374_04820) argR 933598..934047 (+) 450 WP_035409088.1 transcriptional regulator ArgR -
  VJ374_RS04825 (VJ374_04825) recN 934060..935766 (+) 1707 WP_290748949.1 DNA repair protein RecN Machinery gene
  VJ374_RS04830 (VJ374_04830) spo0A 935770..936492 (+) 723 WP_035409083.1 sporulation transcription factor Spo0A -
  VJ374_RS04835 (VJ374_04835) - 936649..937233 (-) 585 WP_329470349.1 dihydrofolate reductase family protein -
  VJ374_RS04840 (VJ374_04840) - 937909..938163 (-) 255 WP_023467590.1 DUF2627 family protein -
  VJ374_RS04845 (VJ374_04845) - 938286..939941 (+) 1656 WP_035409079.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64241.84 Da        Isoelectric Point: 4.6255

>NTDB_id=927357 VJ374_RS04825 WP_290748949.1 934060..935766(+) (recN) [Exiguobacterium sp. 9-2]
MLAELSIKQFAIIDELQIDFKKGMTVLTGETGAGKSIVLDAIGLLIGGRGSAEFVRYGEDRAELEGLFLIEDDHLVYDLA
EEYGIDIEDGLIILRRDLFATGKSVCRVNNKLVTLTILREFGRVLVDMHGQHEHQHLMDSTYHQAILDDFAQEAIAPLLQ
AYQSGYQTYEEKRTALQSLAQSEQELAQRIDLLSFQTEEIEGAKLRAHEEDELLVERNRLANFEKLYASLKTAYDALHDE
MRGIDSVGDAMRELQQASSIDEQFSQQSDAIASAFYGLEEVGYAIRDQLETLEFDSNRLDEIEQRLSVFQQLKRKYGATI
EEVIAYGEKIRIELDTMTNRDERIERLKIEVEQLESELFEIGGRLSQQRRKAAVQLSEAIHLELRELYMEKARFEIRFLQ
DGKTPMLRKNGIDHVEFFIMTNAGEPFKSLGKVASGGELSRIMLGLKSIFSRSVGVASIIFDEVDTGVSGRVAQAMAEKI
YRLSVDGQVLCITHLPQVASMADQHLYIRKIEETDRTTTQVNVLSQADRGNELGRMISGAHMTDLTLRHAEELMDQAKTM
KESLKNGV

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=927357 VJ374_RS04825 WP_290748949.1 934060..935766(+) (recN) [Exiguobacterium sp. 9-2]
ATGCTAGCTGAATTATCGATCAAACAATTTGCGATCATTGACGAGCTACAGATCGACTTTAAAAAAGGAATGACCGTCTT
GACTGGGGAAACAGGTGCCGGTAAATCGATCGTTCTCGATGCGATCGGATTATTAATTGGTGGACGTGGATCCGCGGAAT
TCGTTCGATACGGGGAAGATCGGGCGGAACTAGAAGGATTGTTTCTGATTGAAGACGACCATCTCGTCTATGATCTTGCA
GAAGAGTATGGCATCGATATCGAAGACGGATTGATCATCTTGCGACGTGATCTGTTCGCGACAGGAAAAAGTGTCTGTCG
CGTCAACAATAAGCTGGTCACACTAACGATTTTACGTGAGTTCGGACGTGTCCTCGTCGATATGCACGGGCAACATGAAC
ATCAGCATTTAATGGACAGTACGTACCATCAAGCGATTCTCGATGACTTCGCGCAAGAGGCGATCGCGCCACTCCTTCAA
GCCTATCAGTCCGGTTATCAAACGTATGAAGAAAAACGGACGGCGCTACAATCGCTCGCACAAAGCGAGCAAGAACTCGC
CCAACGGATCGACTTGTTATCGTTTCAGACCGAAGAGATCGAGGGCGCAAAACTTCGAGCACATGAGGAAGATGAGTTAC
TCGTCGAGCGGAATCGTCTTGCGAACTTCGAGAAGTTATATGCGTCGTTGAAGACAGCCTATGACGCCTTACACGATGAG
ATGCGCGGCATCGATTCCGTTGGAGACGCGATGCGTGAACTACAACAAGCATCAAGCATCGACGAACAGTTTTCTCAGCA
AAGTGACGCGATCGCAAGCGCCTTTTATGGACTAGAAGAAGTCGGTTATGCCATTCGAGATCAACTCGAAACACTTGAGT
TCGATTCCAATCGACTCGATGAGATCGAACAACGTTTGTCCGTCTTCCAACAGCTGAAACGAAAATACGGGGCGACGATT
GAGGAAGTCATTGCTTACGGTGAGAAAATTCGGATTGAACTCGATACGATGACAAATCGAGATGAACGAATTGAACGCTT
AAAAATCGAAGTCGAACAGCTCGAAAGCGAATTGTTTGAAATTGGAGGTCGACTCTCACAACAGCGTCGCAAAGCGGCAG
TTCAATTAAGTGAAGCGATTCATTTGGAGTTGCGTGAGCTTTACATGGAGAAGGCGCGGTTTGAAATTCGTTTTCTTCAA
GACGGAAAGACACCGATGCTACGCAAGAACGGGATCGACCATGTGGAATTCTTCATCATGACGAATGCGGGAGAGCCATT
CAAGTCGCTCGGAAAAGTTGCATCGGGCGGGGAATTATCTCGTATCATGCTTGGACTGAAGTCGATCTTCTCGCGCTCGG
TCGGAGTCGCCTCAATCATATTCGATGAAGTCGATACGGGTGTCTCGGGTCGTGTTGCACAAGCGATGGCAGAAAAAATC
TATCGTTTGTCGGTAGACGGACAAGTGCTTTGTATTACGCACTTACCACAAGTCGCTTCGATGGCGGATCAACATCTCTA
TATTCGAAAGATTGAGGAGACGGATCGTACGACGACCCAAGTCAACGTCTTGTCTCAAGCAGATCGAGGGAACGAACTTG
GACGGATGATTTCCGGTGCCCATATGACGGATTTGACATTACGGCATGCCGAGGAATTGATGGATCAGGCGAAGACGATG
AAAGAATCGCTTAAAAATGGGGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.054

100

0.535