Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VW921_RS06030 Genome accession   NZ_CP142820
Coordinates   1255889..1257562 (-) Length   557 a.a.
NCBI ID   WP_002397924.1    Uniprot ID   A0A449FZN5
Organism   Enterococcus faecalis strain CF3A-343     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1250889..1262562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VW921_RS06000 (VW921_06000) ftsL 1251904..1252311 (-) 408 WP_002385090.1 cell division protein FtsL -
  VW921_RS06005 (VW921_06005) rsmH 1252328..1253284 (-) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  VW921_RS06010 (VW921_06010) mraZ 1253299..1253784 (-) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  VW921_RS06015 (VW921_06015) - 1254018..1254410 (-) 393 WP_002383401.1 DUF3397 domain-containing protein -
  VW921_RS06020 (VW921_06020) - 1254655..1255620 (+) 966 WP_002383400.1 magnesium transporter CorA family protein -
  VW921_RS06025 (VW921_06025) - 1255688..1255798 (+) 111 WP_002383399.1 DUF4044 domain-containing protein -
  VW921_RS06030 (VW921_06030) recN 1255889..1257562 (-) 1674 WP_002397924.1 DNA repair protein RecN Machinery gene
  VW921_RS06035 (VW921_06035) - 1257580..1258029 (-) 450 WP_002358881.1 arginine repressor -
  VW921_RS06040 (VW921_06040) - 1258168..1258983 (-) 816 WP_002364633.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  VW921_RS06045 (VW921_06045) - 1258997..1259878 (-) 882 WP_002371528.1 polyprenyl synthetase family protein -
  VW921_RS06050 (VW921_06050) - 1259878..1260108 (-) 231 WP_002364628.1 exodeoxyribonuclease VII small subunit -
  VW921_RS06055 (VW921_06055) xseA 1260110..1261456 (-) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  VW921_RS06060 (VW921_06060) - 1261466..1262311 (-) 846 WP_002355876.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62631.00 Da        Isoelectric Point: 4.5521

>NTDB_id=927104 VW921_RS06030 WP_002397924.1 1255889..1257562(-) (recN) [Enterococcus faecalis strain CF3A-343]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=927104 VW921_RS06030 WP_002397924.1 1255889..1257562(-) (recN) [Enterococcus faecalis strain CF3A-343]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGAATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCCGCTCATCAACAAGCATTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACGGAATTTGAAGTCCGTTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTAGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A449FZN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.691

100

0.501