Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VW860_RS04395 Genome accession   NZ_CP142815
Coordinates   888067..889740 (+) Length   557 a.a.
NCBI ID   WP_002401558.1    Uniprot ID   -
Organism   Enterococcus faecalis strain CF3A-1283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 883067..894740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VW860_RS04365 (VW860_04365) - 883318..884163 (+) 846 WP_002355876.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  VW860_RS04370 (VW860_04370) xseA 884173..885519 (+) 1347 WP_002378127.1 exodeoxyribonuclease VII large subunit -
  VW860_RS04375 (VW860_04375) - 885521..885751 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  VW860_RS04380 (VW860_04380) - 885751..886632 (+) 882 WP_002369880.1 polyprenyl synthetase family protein -
  VW860_RS04385 (VW860_04385) - 886646..887461 (+) 816 WP_002364633.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  VW860_RS04390 (VW860_04390) - 887600..888049 (+) 450 WP_002358881.1 arginine repressor -
  VW860_RS04395 (VW860_04395) recN 888067..889740 (+) 1674 WP_002401558.1 DNA repair protein RecN Machinery gene
  VW860_RS04400 (VW860_04400) - 889831..889941 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  VW860_RS04405 (VW860_04405) - 890009..890974 (-) 966 WP_002383400.1 magnesium transporter CorA family protein -
  VW860_RS04410 (VW860_04410) - 891219..891611 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  VW860_RS04415 (VW860_04415) mraZ 891845..892330 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  VW860_RS04420 (VW860_04420) rsmH 892345..893301 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  VW860_RS04425 (VW860_04425) ftsL 893318..893725 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62689.08 Da        Isoelectric Point: 4.5772

>NTDB_id=926995 VW860_RS04395 WP_002401558.1 888067..889740(+) (recN) [Enterococcus faecalis strain CF3A-1283]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTRAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALTLRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=926995 VW860_RS04395 WP_002401558.1 888067..889740(+) (recN) [Enterococcus faecalis strain CF3A-1283]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGATT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGAATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAATGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACGGGCATATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCCTACTACTTACTACAAGAAGCTAGTGGAGATCTTTCCAGGTTGATTGATGGCTTAG
AACTAGATGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGTGATTCG
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAGGCGGCTCATCAACAAGCGTTGACTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTTGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACGGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCGGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTAGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTCAGTGGCCGTGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATTGTGGCGGGGAGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.168

100

0.496