Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   AB7I05_RS03495 Genome accession   NZ_CP165604
Coordinates   689143..691335 (+) Length   730 a.a.
NCBI ID   WP_005694336.1    Uniprot ID   -
Organism   Haemophilus influenzae strain Rd-KW20     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 684143..696335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB7I05_RS03470 (AB7I05_03470) napA 684361..686844 (-) 2484 WP_005694329.1 nitrate reductase catalytic subunit NapA -
  AB7I05_RS03475 (AB7I05_03475) - 686881..687162 (-) 282 WP_005694331.1 chaperone NapD -
  AB7I05_RS03480 (AB7I05_03480) napF 687155..687685 (-) 531 WP_005694332.1 ferredoxin-type protein NapF -
  AB7I05_RS03485 (AB7I05_03485) - 687891..688235 (-) 345 WP_005694334.1 YggL family protein -
  AB7I05_RS03490 (AB7I05_03490) trmB 688320..689060 (-) 741 WP_005694335.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AB7I05_RS03495 (AB7I05_03495) priA 689143..691335 (+) 2193 WP_005694336.1 primosomal protein N' Machinery gene
  AB7I05_RS03500 (AB7I05_03500) - 691376..692422 (-) 1047 WP_005694337.1 AI-2E family transporter -
  AB7I05_RS03505 (AB7I05_03505) glnB 692422..692760 (-) 339 WP_005654045.1 nitrogen regulatory protein P-II -
  AB7I05_RS03510 (AB7I05_03510) mog 692762..693355 (-) 594 WP_005647046.1 molybdopterin adenylyltransferase -
  AB7I05_RS03515 (AB7I05_03515) - 693438..693794 (-) 357 WP_005694338.1 diacylglycerol kinase -
  AB7I05_RS03520 (AB7I05_03520) relA 693809..696040 (-) 2232 WP_005694339.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 82335.50 Da        Isoelectric Point: 9.2251

>NTDB_id=926969 AB7I05_RS03495 WP_005694336.1 689143..691335(+) (priA) [Haemophilus influenzae strain Rd-KW20]
MKIVRVALAVPLPRLFDYFVPDDVSLQIGMRVLVPFGTQKRVAIVADFPTKSDVPEDKLKAILQPLDLAPLFTPIYWDWL
HWAANYYQAGLGDVLFQALPVKLRNGESAVKNDRTFWRITDAGKNALKQGELKRSKKQAEALQYLSETDLEKGNNDFSSA
IWSALKAKGFIEEITIQTNPLSWQQRLGNNPIVNAENRLTLNKQQALAFSQLLFHSGFNVWLLDGVTGSGKTEIYLQYIE
EILKSGKQVLVLVPEIGLTPQTVQRFKVRFNVEIDVLHSNLTDTQRLYVWDRARSGQSAIVIGTRSALFTQFSNLGAIIL
DEEHDSSYKQQDSWRYHARDLAIVLAQKLNISVLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVIDLKNQNI
QNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPYTYHQHQNVLRCHHCGAQKTIPRQCGDC
GSTHLVTTGLGTEQLEETLKTLFPHYSVARIDRDSTSRKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNV
DSALFSLDFRAEERLAQLYIQVAGRAGRADKQGEVVLQTHYPDHPLLTTLLANGYQAFAKETLQLRHSMGLPPFTFQALI
KAQARHSDLAENCLSQIADFFQSKQITGLQMLGPMPAPFSKKAGQYRWQLLLQHPSRMTLQKALREYQQAELEKNSQVRL
ILDVDPQDLS

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=926969 AB7I05_RS03495 WP_005694336.1 689143..691335(+) (priA) [Haemophilus influenzae strain Rd-KW20]
ATGAAAATTGTCCGAGTGGCACTGGCTGTGCCGCTTCCTCGCTTATTTGATTATTTCGTCCCCGATGATGTTTCATTACA
AATCGGTATGCGTGTTCTTGTGCCTTTTGGCACTCAAAAACGTGTCGCCATTGTGGCTGATTTTCCGACAAAATCGGACG
TGCCAGAGGATAAACTCAAGGCTATTCTTCAACCATTGGATTTAGCCCCACTTTTTACGCCCATTTATTGGGATTGGCTT
CATTGGGCAGCAAATTATTATCAAGCGGGATTAGGCGATGTGTTATTTCAAGCCTTACCTGTGAAATTGCGTAACGGCGA
AAGTGCGGTAAAAAATGACCGCACTTTTTGGCGAATTACGGATGCGGGGAAAAATGCCCTTAAACAAGGCGAATTAAAAC
GCTCGAAAAAGCAAGCTGAAGCCCTACAATACTTATCTGAAACTGATCTTGAAAAAGGCAATAATGATTTTTCCTCTGCC
ATTTGGTCAGCCTTAAAAGCCAAAGGGTTTATTGAAGAAATTACTATCCAAACAAATCCCCTAAGCTGGCAACAAAGATT
AGGCAATAACCCAATTGTTAATGCTGAAAATCGTTTAACCTTAAATAAGCAGCAAGCCTTAGCCTTCAGCCAACTGCTCT
TCCATTCTGGTTTCAATGTATGGCTGCTCGATGGCGTGACTGGTTCAGGCAAAACAGAAATTTATCTGCAATATATTGAA
GAAATTTTAAAATCGGGCAAACAAGTATTAGTGCTTGTACCCGAAATCGGGCTAACACCACAAACGGTGCAACGTTTCAA
AGTGCGTTTCAATGTAGAAATTGATGTGCTGCATTCTAATTTAACCGATACGCAACGGCTTTATGTATGGGATCGCGCCC
GCTCTGGACAAAGTGCTATTGTGATTGGCACTAGATCGGCATTGTTCACGCAATTTTCTAATCTTGGTGCAATTATTTTG
GACGAGGAACACGATTCGTCTTACAAACAGCAAGACAGTTGGCGTTATCACGCGCGAGACTTGGCGATTGTACTGGCTCA
AAAACTGAACATTTCAGTATTAATGGGTTCTGCTACGCCAAGTTTAGAAAGTATTAATAATGTACAAAACGGCAAATACC
AACATTTAGTTTTATCAAAAAGAGCGGGAAATTCTACCGCACTTCGTCATTTCGTTATTGATTTGAAAAATCAAAATATA
CAAAACGGGCTTTCAAAACCCTTGTTGGAACGAATGAAAGCCCACCTCGAAAAAGGCAATCAAGTGTTGCTTTTCTTGAA
TCGTCGTGGCTTTGCGCCCGTATTGCTTTGCCATGAATGTGGTTGGATCGCACAATGCCCGCATTGTGAAAAACCTTATA
CCTATCATCAGCATCAAAATGTATTGCGTTGTCATCATTGTGGTGCACAGAAAACTATTCCTCGACAATGTGGTGATTGT
GGCTCGACTCATTTAGTCACTACAGGTCTCGGCACAGAACAATTAGAAGAAACCTTGAAAACTCTATTTCCTCATTATTC
TGTGGCTCGAATCGACCGCGATAGCACTTCGCGTAAAGGAAAATTGGAAGGTTATTTAGAAGATATTCAACAAGGCAAAA
GTCAAATTTTGATTGGCACACAAATGCTTGCGAAAGGACATCATTTCCCGAATGTTACTCTCGTTGCCTTAGTGAATGTA
GATAGTGCATTATTTTCACTGGATTTTCGTGCAGAAGAACGTTTAGCTCAACTTTATATTCAGGTTGCTGGACGTGCAGG
ACGTGCCGATAAACAAGGTGAAGTGGTGCTACAAACACATTATCCAGATCATCCTTTGCTTACCACTTTATTGGCAAATG
GCTACCAAGCTTTTGCAAAAGAAACCTTACAATTACGCCATTCAATGGGATTGCCGCCTTTTACTTTTCAGGCGTTAATC
AAAGCACAGGCTCGACATTCTGATCTTGCAGAAAATTGCTTAAGCCAAATTGCAGATTTTTTTCAATCGAAGCAAATTAC
GGGATTACAAATGCTTGGCCCAATGCCTGCACCGTTCAGCAAAAAAGCGGGGCAATATCGCTGGCAGTTATTATTGCAGC
ATCCATCAAGAATGACGTTGCAAAAAGCATTAAGAGAATATCAACAAGCCGAACTAGAAAAAAACAGCCAAGTGCGGTTA
ATTTTGGACGTCGATCCGCAAGACTTATCATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(503-589)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-100)

Primosomal protein N C-terminal domain (PriA_C)

(633-726)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-471)

DEAD/DEAH box helicase (DEAD)

(204-366)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

44.624

100

0.455