Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AB7I05_RS01140 Genome accession   NZ_CP165604
Coordinates   225497..226699 (-) Length   400 a.a.
NCBI ID   WP_032828327.1    Uniprot ID   -
Organism   Haemophilus influenzae strain Rd-KW20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 220497..231699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB7I05_RS01115 (AB7I05_01115) - 220578..221249 (+) 672 WP_005693164.1 3-oxoacid CoA-transferase subunit B -
  AB7I05_RS01120 (AB7I05_01120) - 221246..222589 (+) 1344 WP_005693163.1 TIGR00366 family protein -
  AB7I05_RS01125 (AB7I05_01125) - 222604..223785 (+) 1182 WP_005666204.1 acetyl-CoA C-acetyltransferase -
  AB7I05_RS01130 (AB7I05_01130) ftsX 223880..224812 (-) 933 WP_005660149.1 permease-like cell division protein FtsX -
  AB7I05_RS01135 (AB7I05_01135) ftsE 224822..225478 (-) 657 WP_005632750.1 cell division ATP-binding protein FtsE -
  AB7I05_RS01140 (AB7I05_01140) pilA 225497..226699 (-) 1203 WP_032828327.1 signal recognition particle-docking protein FtsY Machinery gene
  AB7I05_RS01145 (AB7I05_01145) rsmD 226796..227377 (+) 582 WP_005693161.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB7I05_RS01150 (AB7I05_01150) trmL 227388..227870 (+) 483 WP_005652354.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  AB7I05_RS01155 (AB7I05_01155) - 227919..228755 (-) 837 WP_032828326.1 glycosyltransferase family 25 protein -
  AB7I05_RS01160 (AB7I05_01160) ribB 228782..229429 (-) 648 WP_005652350.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -
  AB7I05_RS01165 (AB7I05_01165) nadR 229672..230913 (+) 1242 Protein_230 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  AB7I05_RS01170 (AB7I05_01170) - 230910..231590 (+) 681 WP_005693159.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44431.82 Da        Isoelectric Point: 4.5496

>NTDB_id=926945 AB7I05_RS01140 WP_032828327.1 225497..226699(-) (pilA) [Haemophilus influenzae strain Rd-KW20]
MAEENKKGGFWASLFGRNKKQDEPKIEPIIEEEKIKDIEPSIEKFEANDLVEEEKIQEISTALEPIEEIIEAKNLEDEFQ
PVVEIETREKPSEGGFFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTEHASRK
ELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVE
QLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLT
LDAGTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEALFVHEEE

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=926945 AB7I05_RS01140 WP_032828327.1 225497..226699(-) (pilA) [Haemophilus influenzae strain Rd-KW20]
ATGGCTGAAGAAAATAAAAAAGGCGGATTTTGGGCATCGTTATTTGGGCGTAATAAAAAGCAAGATGAACCTAAAATTGA
GCCGATAATTGAAGAAGAAAAGATAAAAGATATCGAGCCGTCTATTGAAAAATTTGAAGCTAATGATTTAGTCGAAGAAG
AAAAAATACAGGAAATTTCAACCGCACTTGAGCCGATTGAAGAAATCATCGAAGCGAAAAATTTAGAAGATGAGTTTCAG
CCTGTTGTTGAAATTGAAACTCGCGAAAAACCAAGTGAAGGGGGCTTTTTTAGTCGTTTAGTTAAGGGATTACTGAAAAC
TAAACAAAATATTGGCGCGGGTTTTCGTGGTTTTTTCTTAGGAAAGAAAATTGATGATGAGTTGTTTGAAGAATTAGAAG
AACAACTTTTAATTGCGGATATTGGTGTGCCGACAACAAGTAAAATCATCAAAAATTTGACTGAACACGCAAGCCGCAAA
GAATTACAAGATGCCGAGCTTTTATATCAACAATTAAAAGTAGAAATGGCGGATATTCTTGAGCCAGTAGCACAACCGTT
AGAGATTGATAGCACGAAAAAACCTTATGTGATTTTAATGGTGGGCGTAAATGGCGTGGGTAAAACAACGACAATTGGTA
AGCTCGCACGTAAATTTCAGGCTGAAGGAAAATCAGTGATGCTTGCAGCGGGCGATACTTTCCGAGCGGCGGCTGTTGAG
CAGCTTCAAGTTTGGGGAGAACGCAATCATATTCCAGTTGTTGCGCAAAGCACGGGTTCTGATTCTGCGTCTGTGATTTT
TGATGCGATGCAATCAGCGGCTGCACGCAATATTGATATTCTTATTGCGGATACGGCGGGTCGTTTACAAAATAAAAATA
ACTTAATGGACGAACTGAAAAAAATTGTTCGTGTTATGAAAAAATATGATGAAACTGCGCCACATGAAATTATGCTTACG
CTGGATGCTGGCACGGGACAAAATGCTATTAGCCAAGCGAAGTTATTTAATGAGGCTGTGGGTTTAACAGGAATCTCTCT
AACTAAATTAGATGGCACGGCAAAAGGCGGCGTGATTTTTGCCATAGCCGATCAGTTTAAGTTGCCTATTCGCTATATCG
GTGTAGGCGAGAAAATTGAAGATTTACGTGAGTTTAATGCGAAAGAATTTATTGAGGCATTATTCGTTCATGAAGAAGAA
TAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(113-176)

SRP54-type protein, GTPase domain (SRP54)

(196-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.269

100

0.45