Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HQS1_RS26635 Genome accession   NZ_AP025556
Coordinates   5809283..5809681 (-) Length   132 a.a.
NCBI ID   WP_016447937.1    Uniprot ID   A0AAX3SQK3
Organism   Delftia lacustris strain HQS1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5804283..5814681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQS1_RS26620 (HQS1_52640) - 5806104..5808356 (-) 2253 WP_016447934.1 methyl-accepting chemotaxis protein -
  HQS1_RS26625 (HQS1_52650) - 5808375..5808902 (-) 528 WP_016447935.1 chemotaxis protein CheW -
  HQS1_RS26630 (HQS1_52660) - 5808918..5809283 (-) 366 WP_016447936.1 response regulator -
  HQS1_RS26635 (HQS1_52670) pilG 5809283..5809681 (-) 399 WP_016447937.1 response regulator Regulator
  HQS1_RS26640 - 5809729..5809881 (-) 153 WP_017406135.1 rubredoxin -
  HQS1_RS26645 (HQS1_52690) - 5809997..5810956 (+) 960 WP_016453190.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HQS1_RS26650 (HQS1_52700) hemL 5811049..5812347 (+) 1299 WP_016453189.1 glutamate-1-semialdehyde 2,1-aminomutase -
  HQS1_RS26655 (HQS1_52710) - 5812398..5812997 (-) 600 WP_034364270.1 DNA-3-methyladenine glycosylase I -
  HQS1_RS26660 (HQS1_52720) - 5813000..5813476 (-) 477 WP_017406137.1 c-type cytochrome -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14600.85 Da        Isoelectric Point: 6.9242

>NTDB_id=92692 HQS1_RS26635 WP_016447937.1 5809283..5809681(-) (pilG) [Delftia lacustris strain HQS1]
MTTSGAPLRVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
DTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVEQFGKQTIGAL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=92692 HQS1_RS26635 WP_016447937.1 5809283..5809681(-) (pilG) [Delftia lacustris strain HQS1]
GTGACGACATCGGGCGCACCCTTGCGCGTACTCGTGGTGGATGACAGCAATACCATCCGCCGCAGCGCAGAAATCTTCCT
CAAGCAGGGCGGGCACGAAGTGCTCCTGGCCGACGACGGCTTCGACGCACTGTCCAAGGTCAACGACTACCAGCCCCAGC
TGATCTTCTGCGACATCCTCATGCCCAAGCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCGCGCTTTGCT
GACACGCCTGTGGTCATGCTCTCGTCCAAGGACGGCGTATTCGACAAGGCGCGCGGGCGCATGGTGGGCTGCCAGGACTA
CCTCACGAAACCCTTCACCAAAGACCAGCTGCTGCAGGCCGTGGAGCAGTTCGGCAAGCAAACCATAGGAGCACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.772

86.364

0.508

Multiple sequence alignment