Detailed information NTG0926894

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB6907_RS09745
• Genome accession: NZ_CP165600
• Coordinates: 2036104..2037096 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081586.1
• Uniprot ID: Q540P1
• Organism: Escherichia coli str. K-12 substr. W3110 strain K-12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2031104..2042096

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB6907_RS09715 (AB6907_09730)	ispD	2031165..2031875 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB6907_RS09720 (AB6907_09735)	ispF	2031875..2032354 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB6907_RS09725 (AB6907_09740)	truD	2032351..2033400 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AB6907_RS09730 (AB6907_09745)	surE	2033381..2034142 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB6907_RS09735 (AB6907_09750)	pcm	2034136..2034762 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AB6907_RS09740 (AB6907_09755)	nlpD	2034947..2036041 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AB6907_RS09745 (AB6907_09760)	rpoS	2036104..2037096 (+)	993	WP_000081586.1	RNA polymerase sigma factor RpoS	Regulator
AB6907_RS09750 (AB6907_09765)	ygbN	2037190..2038554 (-)	1365	WP_000104441.1	GntP family transporter	-
AB6907_RS09755 (AB6907_09770)	ygbM	2038643..2039419 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
AB6907_RS09760 (AB6907_09775)	ygbL	2039424..2040062 (-)	639	WP_001278994.1	aldolase	-
AB6907_RS09765 (AB6907_09780)	otnK	2040154..2041320 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37956.89 Da
• Isoelectric Point: 4.5886

>NTDB_id=926894 AB6907_RS09745 WP_000081586.1 2036104..2037096(+) (rpoS) [Escherichia coli str. K-12 substr. W3110 strain K-12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVELEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=926894 AB6907_RS09745 WP_000081586.1 2036104..2037096(+) (rpoS) [Escherichia coli str. K-12 substr. W3110 strain K-12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAATTGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: Q540P1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715