Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB6W33_RS07960 Genome accession   NZ_CP163561
Coordinates   1520593..1522332 (-) Length   579 a.a.
NCBI ID   WP_000323506.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS-B4009     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515593..1527332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W33_RS07940 (AB6W33_07925) - 1516272..1516682 (-) 411 WP_000594935.1 peptide deformylase -
  AB6W33_RS07945 (AB6W33_07930) gdhA 1516752..1518101 (-) 1350 WP_373660927.1 NADP-specific glutamate dehydrogenase -
  AB6W33_RS07950 (AB6W33_07935) - 1518269..1518778 (+) 510 WP_000870956.1 HdeD family acid-resistance protein -
  AB6W33_RS07955 (AB6W33_07940) rcrQ 1518819..1520588 (-) 1770 WP_001227935.1 ABC transporter ATP-binding protein Regulator
  AB6W33_RS07960 (AB6W33_07945) rcrP 1520593..1522332 (-) 1740 WP_000323506.1 ABC transporter ATP-binding protein Regulator
  AB6W33_RS07965 (AB6W33_07950) - 1522399..1522872 (-) 474 WP_000586885.1 GNAT family N-acetyltransferase -
  AB6W33_RS07970 (AB6W33_07955) - 1522869..1524737 (-) 1869 WP_001279326.1 ABC-F family ATP-binding cassette domain-containing protein -
  AB6W33_RS07975 (AB6W33_07960) - 1524748..1525956 (-) 1209 WP_050265404.1 CCA tRNA nucleotidyltransferase -
  AB6W33_RS07980 (AB6W33_07965) - 1526141..1526989 (-) 849 WP_000761620.1 DegV family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64816.25 Da        Isoelectric Point: 6.2591

>NTDB_id=926822 AB6W33_RS07960 WP_000323506.1 1520593..1522332(-) (rcrP) [Streptococcus agalactiae strain GBS-B4009]
MAYIWSYLKRYPNWLWLDLLGAMLFVTVILGMPTALAGMIDNGVTKGDRTGVYLWTFIMFIFVVLGIIGRITMAYASSRL
TTTMIRDMRNDMYAKLQEYSHHEYEQIGVSSLVTRMTSDTFVLMQFAEMSLRLGLVTPMVMIFSVVMILITSPSLAWLVA
VAMPLLVGVVLYVAIKTKPLSERQQTMLDKINQYVRENLTGLRVVRAFARENFQSQKFQVANQRYTDTSTGLFKLTGLTE
PLFVQIIIAMIVAIVWFALDPLQRGAIKIGDLVAFIEYSFHALFSFLLFANLFTMYPRMVVSSHRIREVMDMPISINPNA
EGVTDTKLKGHLEFDNVTFAYPGETESPVLHDISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGKILVDGVDVRD
YNLKSLRQKIGFIPQKALLFTGTIGENLKYGKADATIDDLRQAVDISQAKEFIESHQEAFETHLAEGGSNLSGGQKQRLS
IARAVVKDPDLYIFDDSFSALDYKTDATLRARLKEVTGDSTVLIVAQRVGTIMDADQIIVLDEGEIVGRGTHAQLIENNA
IYREIAESQLKNQNLSEGE

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=926822 AB6W33_RS07960 WP_000323506.1 1520593..1522332(-) (rcrP) [Streptococcus agalactiae strain GBS-B4009]
ATGGCATATATTTGGTCTTATTTGAAAAGGTACCCCAATTGGTTATGGCTTGATTTACTAGGAGCTATGCTTTTTGTGAC
GGTTATCCTAGGAATGCCCACAGCCTTAGCGGGTATGATTGATAATGGCGTTACAAAAGGTGATCGGACTGGAGTTTATC
TGTGGACGTTCATCATGTTTATATTTGTTGTACTAGGTATTATTGGGCGTATTACGATGGCTTACGCATCTAGTCGCTTA
ACGACAACAATGATTAGAGATATGCGTAATGATATGTATGCTAAGCTTCAAGAATACTCCCATCATGAATATGAACAGAT
AGGTGTATCTTCACTAGTGACACGTATGACAAGCGATACTTTTGTTTTGATGCAATTTGCTGAAATGTCTTTACGTTTAG
GCCTAGTAACTCCTATGGTAATGATTTTTAGCGTGGTTATGATACTAATTACGAGTCCATCTTTGGCTTGGCTTGTAGCG
GTTGCGATGCCTCTTTTGGTAGGAGTCGTTTTATATGTAGCTATAAAAACAAAACCTTTATCTGAAAGACAACAGACTAT
GCTTGATAAAATCAATCAATATGTTCGTGAAAATTTAACAGGGTTACGCGTTGTTAGAGCCTTTGCAAGAGAGAATTTTC
AATCACAAAAATTTCAAGTCGCTAACCAACGTTACACAGATACTTCAACTGGTCTTTTTAAATTAACAGGGCTAACAGAA
CCACTTTTCGTTCAAATTATTATTGCAATGATTGTGGCTATCGTTTGGTTTGCTTTGGATCCCTTACAAAGAGGTGCTAT
TAAAATAGGGGATTTAGTTGCTTTTATCGAATATAGCTTCCATGCTCTCTTTTCATTTTTGCTATTTGCCAATCTTTTTA
CTATGTATCCTCGTATGGTGGTATCAAGTCATCGTATTAGAGAGGTGATGGATATGCCAATCTCTATCAATCCTAATGCC
GAAGGTGTTACGGATACGAAACTTAAAGGGCATTTAGAATTTGATAATGTAACATTCGCTTATCCAGGAGAAACAGAGAG
TCCCGTTTTGCATGATATTTCTTTTAAAGCTAAGCCTGGAGAAACAATTGCTTTTATTGGTTCAACAGGTTCAGGAAAAT
CTTCTCTTGTTAATTTGATTCCACGTTTTTATGATGTGACACTTGGAAAAATCTTAGTAGATGGAGTTGATGTAAGAGAT
TATAACCTTAAATCACTTCGCCAAAAGATTGGATTTATCCCCCAAAAAGCTCTTTTATTTACAGGGACAATAGGAGAGAA
TTTAAAATATGGAAAAGCTGATGCTACTATTGATGATCTTAGACAAGCGGTTGATATTTCTCAAGCTAAAGAGTTTATTG
AGAGTCACCAAGAAGCCTTTGAAACGCATTTAGCTGAAGGTGGGAGCAATCTTTCTGGGGGTCAAAAACAACGGTTATCT
ATTGCTAGGGCTGTTGTTAAAGATCCAGATTTATATATTTTTGATGATTCATTTTCTGCTCTCGATTATAAGACAGACGC
TACTTTAAGAGCGCGTCTAAAAGAAGTAACCGGTGATTCTACAGTTTTGATAGTTGCTCAAAGGGTGGGTACGATTATGG
ATGCTGATCAGATTATTGTCCTTGATGAAGGCGAAATTGTCGGTCGTGGTACCCACGCTCAATTAATAGAAAATAATGCT
ATTTATCGTGAAATCGCTGAGTCACAACTGAAGAACCAAAACTTATCAGAAGGAGAGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(30-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.011

94.301

0.368