Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB6W33_RS07955 Genome accession   NZ_CP163561
Coordinates   1518819..1520588 (-) Length   589 a.a.
NCBI ID   WP_001227935.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS-B4009     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513819..1525588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W33_RS07935 (AB6W33_07920) - 1514163..1516235 (+) 2073 WP_000726930.1 bifunctional metallophosphatase/5'-nucleotidase -
  AB6W33_RS07940 (AB6W33_07925) - 1516272..1516682 (-) 411 WP_000594935.1 peptide deformylase -
  AB6W33_RS07945 (AB6W33_07930) gdhA 1516752..1518101 (-) 1350 WP_373660927.1 NADP-specific glutamate dehydrogenase -
  AB6W33_RS07950 (AB6W33_07935) - 1518269..1518778 (+) 510 WP_000870956.1 HdeD family acid-resistance protein -
  AB6W33_RS07955 (AB6W33_07940) rcrQ 1518819..1520588 (-) 1770 WP_001227935.1 ABC transporter ATP-binding protein Regulator
  AB6W33_RS07960 (AB6W33_07945) rcrP 1520593..1522332 (-) 1740 WP_000323506.1 ABC transporter ATP-binding protein Regulator
  AB6W33_RS07965 (AB6W33_07950) - 1522399..1522872 (-) 474 WP_000586885.1 GNAT family N-acetyltransferase -
  AB6W33_RS07970 (AB6W33_07955) - 1522869..1524737 (-) 1869 WP_001279326.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66209.60 Da        Isoelectric Point: 6.3799

>NTDB_id=926821 AB6W33_RS07955 WP_001227935.1 1518819..1520588(-) (rcrQ) [Streptococcus agalactiae strain GBS-B4009]
MRKKSVFLRLWSYLTRYKATLFLAIFLKVLSSFMSVLEPFILGLAITELTANLVDMAKGVSGAELNVPYIAGILIIYFFR
GVFYELGSYGSNYFMTTVVQKSIRDIRHDLNHKINKVPVSYFDKHQFGDMLGRFTSDVETVSNALQQSFLQIINAFLSII
LVVVMVLYLNVPLAMIIIACIPVTYFSAQAILKRSQPYFKEQAKILGELNGFVQEKLTGFNIIKLYGREEASSQEFRDIT
DNLRHVGFKASFISGIMMPVLNGISDFIYLIIAFVGGLQVIAGTLTIGNMQAFVQYVWQISQPVQTITQLSGVLQSAKSS
LERIFEVLDEEEEANQVTEKLSHDLTGQVSFHGVDFHYSPDRPLIRDFNLDVEPGQMIAIVGPTGAGKTTLINLLMRFYD
VSEGAITVDGHDIRHLSRQDFRQQFGMVLQDAWLYEGTIKENLRFGNLEASDEDIVAAAKAANVDHFIRTLPGGYNMVMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKKLMEGRTSFVIAHRLSTIQEADNILVLKDGQ
IIEQGNHQKLLADKGFYYELYNSQFSNSK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=926821 AB6W33_RS07955 WP_001227935.1 1518819..1520588(-) (rcrQ) [Streptococcus agalactiae strain GBS-B4009]
ATGAGAAAAAAATCTGTTTTTTTGAGATTATGGTCTTACCTAACTCGCTACAAAGCTACTCTTTTCTTAGCGATTTTTTT
GAAAGTTTTATCTAGTTTTATGAGTGTTCTGGAGCCTTTTATTTTAGGGTTAGCGATAACAGAGTTGACTGCTAACCTTG
TTGATATGGCTAAGGGAGTTTCTGGGGCAGAATTGAACGTTCCTTATATTGCTGGTATTTTGATTATTTATTTTTTCAGA
GGTGTTTTCTATGAATTAGGTTCTTATGGCTCAAATTATTTTATGACTACTGTCGTTCAAAAAAGTATCCGTGATATCCG
TCATGATTTGAATCATAAAATCAATAAAGTTCCTGTATCGTATTTTGATAAGCACCAATTTGGAGATATGTTGGGACGTT
TTACAAGTGATGTTGAAACGGTCTCAAATGCTTTACAACAGAGCTTTTTACAGATTATCAATGCTTTTTTAAGTATTATT
TTAGTAGTCGTTATGGTACTTTATCTAAATGTACCATTAGCCATGATTATCATTGCTTGTATTCCTGTAACTTATTTTAG
TGCACAAGCGATACTAAAAAGATCCCAACCTTACTTTAAAGAACAGGCAAAGATTCTGGGAGAACTGAATGGTTTTGTAC
AAGAGAAATTAACTGGTTTCAATATCATAAAATTATATGGTAGAGAAGAGGCGTCTAGTCAAGAATTTCGTGATATAACG
GATAATCTACGTCATGTAGGTTTCAAAGCTAGCTTCATTTCAGGAATTATGATGCCAGTATTGAATGGTATCTCTGATTT
TATTTACCTTATCATTGCATTTGTTGGCGGTTTACAAGTTATTGCTGGTACCTTAACAATTGGTAACATGCAGGCATTTG
TGCAGTATGTTTGGCAAATTAGTCAACCCGTTCAAACCATTACACAATTATCAGGTGTTTTGCAAAGTGCAAAATCTTCC
TTAGAACGTATTTTTGAAGTCTTAGATGAAGAAGAGGAAGCCAATCAAGTCACTGAAAAATTGAGCCATGACTTAACCGG
TCAAGTCAGCTTTCATGGTGTCGATTTTCACTATTCTCCGGATAGGCCACTTATCCGCGACTTTAACTTAGACGTAGAAC
CAGGGCAAATGATTGCAATTGTAGGGCCAACAGGTGCAGGTAAGACAACACTTATAAACTTACTCATGAGATTCTACGAT
GTTAGTGAAGGTGCTATCACCGTAGATGGTCACGATATTAGACACCTATCACGCCAAGATTTCCGGCAACAATTTGGCAT
GGTGTTGCAAGATGCTTGGTTATATGAAGGTACAATAAAAGAAAATCTTAGATTCGGTAATCTTGAAGCCAGTGATGAGG
ATATAGTTGCTGCTGCCAAAGCTGCGAATGTTGACCACTTTATTCGAACGTTACCTGGTGGCTACAATATGGTGATGAAT
CAAGAATCAAGCAATATCTCCTTAGGACAAAAGCAACTGTTGACTATTGCACGTGCTTTATTAGCAGATCCTAAAATTTT
AATTTTAGATGAAGCGACTTCATCTGTTGATACAAGGTTGGAATTGCTTATTCAAAAAGCTATGAAAAAATTGATGGAAG
GAAGAACTAGTTTTGTCATTGCACACCGTCTATCAACGATTCAAGAGGCAGACAACATTTTAGTTCTAAAGGATGGTCAA
ATCATCGAACAAGGTAATCACCAGAAACTCCTAGCAGATAAAGGATTTTATTACGAATTATATAATAGCCAATTTTCAAA
TAGTAAATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

45.161

100

0.452