Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   AB6W33_RS07930 Genome accession   NZ_CP163561
Coordinates   1513454..1513894 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain GBS-B4009     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508454..1518894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W33_RS07915 (AB6W33_07900) - 1509112..1509738 (-) 627 WP_000449644.1 GTP pyrophosphokinase family protein -
  AB6W33_RS07920 (AB6W33_07905) rcrQ 1509846..1511600 (-) 1755 WP_000851087.1 ABC transporter ATP-binding protein Regulator
  AB6W33_RS07925 (AB6W33_07910) rcrP 1511590..1513407 (-) 1818 WP_000481813.1 ABC transporter ATP-binding protein Regulator
  AB6W33_RS07930 (AB6W33_07915) rcrR 1513454..1513894 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  AB6W33_RS07935 (AB6W33_07920) - 1514163..1516235 (+) 2073 WP_000726930.1 bifunctional metallophosphatase/5'-nucleotidase -
  AB6W33_RS07940 (AB6W33_07925) - 1516272..1516682 (-) 411 WP_000594935.1 peptide deformylase -
  AB6W33_RS07945 (AB6W33_07930) gdhA 1516752..1518101 (-) 1350 WP_373660927.1 NADP-specific glutamate dehydrogenase -
  AB6W33_RS07950 (AB6W33_07935) - 1518269..1518778 (+) 510 WP_000870956.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=926820 AB6W33_RS07930 WP_000431168.1 1513454..1513894(-) (rcrR) [Streptococcus agalactiae strain GBS-B4009]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=926820 AB6W33_RS07930 WP_000431168.1 1513454..1513894(-) (rcrR) [Streptococcus agalactiae strain GBS-B4009]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATTTCTAAGTCTGTAGCGTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411