Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   AB6W33_RS01385 Genome accession   NZ_CP163561
Coordinates   228625..228996 (+) Length   123 a.a.
NCBI ID   WP_000601104.1    Uniprot ID   Q8E233
Organism   Streptococcus agalactiae strain GBS-B4009     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 223625..233996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W33_RS01350 (AB6W33_01355) - 224100..226112 (+) 2013 WP_000536261.1 DUF859 family phage minor structural protein -
  AB6W33_RS01355 (AB6W33_01360) - 226126..226452 (+) 327 WP_000404431.1 DUF1366 domain-containing protein -
  AB6W33_RS01360 (AB6W33_01365) - 226427..226639 (+) 213 WP_000698337.1 hypothetical protein -
  AB6W33_RS01365 (AB6W33_01370) - 226652..226954 (+) 303 WP_000215499.1 hypothetical protein -
  AB6W33_RS01370 (AB6W33_01375) - 226956..227291 (+) 336 WP_001001960.1 phage holin -
  AB6W33_RS01375 (AB6W33_01380) - 227293..228012 (+) 720 WP_000236381.1 peptidoglycan amidohydrolase family protein -
  AB6W33_RS01380 (AB6W33_01385) comGF/cglF 228225..228647 (+) 423 WP_001264244.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB6W33_RS01385 (AB6W33_01390) comGG 228625..228996 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB6W33_RS01390 (AB6W33_01395) comGH 229111..230085 (+) 975 WP_001008574.1 class I SAM-dependent methyltransferase Machinery gene
  AB6W33_RS01395 (AB6W33_01400) - 230117..231310 (+) 1194 WP_000047534.1 acetate kinase -
  AB6W33_RS01400 (AB6W33_01405) - 231462..231668 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  AB6W33_RS01405 (AB6W33_01410) - 231727..231864 (+) 138 WP_001865900.1 hypothetical protein -
  AB6W33_RS01410 (AB6W33_01415) - 231905..232360 (+) 456 WP_000905673.1 hypothetical protein -
  AB6W33_RS01415 (AB6W33_01420) - 232429..233094 (+) 666 WP_000008113.1 CPBP family intramembrane glutamic endopeptidase -
  AB6W33_RS01420 (AB6W33_01425) proC 233115..233885 (-) 771 WP_001865901.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13879.09 Da        Isoelectric Point: 10.0693

>NTDB_id=926760 AB6W33_RS01385 WP_000601104.1 228625..228996(+) (comGG) [Streptococcus agalactiae strain GBS-B4009]
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFTGGYASYLQ
EGNYLQVKVTLDKGGNYNHKFYRKTDTLQVPLKSNDNKASHKH

Nucleotide


Download         Length: 372 bp        

>NTDB_id=926760 AB6W33_RS01385 WP_000601104.1 228625..228996(+) (comGG) [Streptococcus agalactiae strain GBS-B4009]
ATGATTTTAAAGAAGAAACTTAAAGCTGGCATCCTTTTGCAAGCTATTGTATTGGCTGCTGTATTTACACTCGTCTTACA
GTTTTATCTAGCAAGAATATTGGCAACAGAAAGACAGTATCATAGCCAAATTGAAGCAAGTAAAGCTTATTTAACAGCGC
AGTTAGCTTATAAAACAATAGAAGGTGACTCCATATCAGGAAAATGTTATTTTACAGGAGGATATGCTTCATACCTCCAA
GAAGGGAACTATTTACAAGTTAAGGTTACATTGGATAAGGGAGGAAACTATAACCATAAGTTTTATCGTAAAACAGACAC
TCTCCAAGTACCTCTCAAGTCTAATGATAATAAAGCAAGCCATAAACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E233

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

44.554

82.114

0.366
  comGG Streptococcus mutans UA159

44.554

82.114

0.366