Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8628_RS06370 Genome accession   NZ_AP028335
Coordinates   1206603..1207097 (+) Length   164 a.a.
NCBI ID   WP_002852694.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10174     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201603..1212097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8628_RS06355 (B10174_12480) - 1202989..1204167 (-) 1179 WP_002852672.1 metal-dependent hydrolase -
  R8628_RS06360 (B10174_12490) gpsA 1204177..1205073 (-) 897 WP_072233169.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8628_RS06365 (B10174_12500) gatB 1205070..1206488 (-) 1419 WP_002852902.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8628_RS06370 (B10174_12510) luxS 1206603..1207097 (+) 495 WP_002852694.1 S-ribosylhomocysteine lyase Regulator
  R8628_RS06375 (B10174_12520) - 1207409..1208401 (+) 993 WP_002852878.1 isopenicillin N synthase family dioxygenase -
  R8628_RS06380 (B10174_12530) - 1208412..1209182 (+) 771 WP_002852735.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8628_RS06385 (B10174_12540) metE 1209194..1211458 (+) 2265 WP_002852733.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18194.21 Da        Isoelectric Point: 7.3250

>NTDB_id=92675 R8628_RS06370 WP_002852694.1 1206603..1207097(+) (luxS) [Campylobacter jejuni strain BCH-10174]
MPLLDSFKVDHTKMPAPAVRLAKVIKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=92675 R8628_RS06370 WP_002852694.1 1206603..1207097(+) (luxS) [Campylobacter jejuni strain BCH-10174]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATAAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment