Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   VJ143_RS19705 Genome accession   NZ_CP142740
Coordinates   4205900..4208125 (+) Length   741 a.a.
NCBI ID   WP_056517360.1    Uniprot ID   A0AAW3JYC0
Organism   Acinetobacter guillouiae strain 13-3     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4200900..4213125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS19680 (VJ143_19690) - 4202414..4202752 (-) 339 WP_327857815.1 tRNA-binding protein -
  VJ143_RS19685 (VJ143_19695) - 4203092..4203355 (+) 264 WP_034617824.1 DUF2798 domain-containing protein -
  VJ143_RS19690 (VJ143_19700) - 4203432..4203767 (-) 336 WP_004725552.1 hypothetical protein -
  VJ143_RS19695 (VJ143_19705) gspG 4204049..4204486 (-) 438 WP_004725550.1 type II secretion system major pseudopilin GspG -
  VJ143_RS19700 (VJ143_19710) gspF 4204526..4205731 (-) 1206 WP_004725548.1 type II secretion system inner membrane protein GspF -
  VJ143_RS19705 (VJ143_19715) priA 4205900..4208125 (+) 2226 WP_056517360.1 primosomal protein N' Machinery gene
  VJ143_RS19710 (VJ143_19720) - 4208403..4210298 (+) 1896 WP_327857816.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  VJ143_RS19715 (VJ143_19725) - 4210382..4211257 (+) 876 WP_004725526.1 Hsp33 family molecular chaperone HslO -
  VJ143_RS19720 (VJ143_19730) - 4211605..4212573 (+) 969 WP_034617833.1 DnaJ C-terminal domain-containing protein -
  VJ143_RS19725 (VJ143_19735) - 4212615..4212953 (+) 339 WP_004725521.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84302.68 Da        Isoelectric Point: 8.8802

>NTDB_id=926658 VJ143_RS19705 WP_056517360.1 4205900..4208125(+) (priA) [Acinetobacter guillouiae strain 13-3]
MSNTLATPQTIYRIQVAVPVYLNDCFDYQVTAEQYAQAEVGARVAVSFGRQNLIGVIVKKVPIDEPVDSHFKLKAITELL
DEQAILDSKVLSLLTWSSQYYQFPIGEVIQTALPTLLRQGKPYNLLARIWKLLDLHAEDKVKRSEKQQEAYKILKLHPKG
TQENILNLSGVETATLKILEKKDIVRCDLEPQNVTPEPVQLAQMPLTPNDDQKKAIQAILKAQKKYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIALLHSGLNDTKRLQAWQHAQTGKASIILGTRSAIYTPL
PHLGLIILDEEHDLSFKQQEGFRYHARDVAMYRAHLENCPIILGSATPSIDSYYLARQEKLTRIELNQRAGAAIMPKMHL
IDLKVAKKQHGLSDVLIAEIKKRLEKKEQVLIFLNRRGYAPVLICESCGWQANCPNCDAHFTLHLKPYQHLHCHHCGTIN
RMPDACPQCNQQQLKPIGMGTAKVEETLNELFPHFPVLRVDRDSTSRVGSWQKIYDQIQKSEPTILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDFRATERTAQLIIQVAGRAGRGEMKGEVYLQTLRPDHPLLNTLIHNDYRTFAKQTLKDRQAALL
PPFRYTALIRCDSKHQEENLKFLTEMTQLLRQTAEENLIDIWGPIPAPMERKAGRYQAHVVLLSQDRAKMHFYIRQWWQQ
LLHSKPSTMKVTIDVDPQELS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=926658 VJ143_RS19705 WP_056517360.1 4205900..4208125(+) (priA) [Acinetobacter guillouiae strain 13-3]
ATGTCGAATACCCTTGCTACGCCACAGACGATTTATCGTATTCAAGTTGCTGTTCCAGTCTATTTGAATGACTGCTTTGA
TTACCAAGTCACCGCTGAACAATATGCGCAAGCTGAAGTCGGTGCGCGTGTTGCAGTGTCTTTTGGCAGACAAAATCTGA
TTGGTGTTATTGTCAAGAAAGTACCTATTGATGAACCTGTGGATTCTCATTTTAAACTCAAAGCCATTACTGAACTGTTA
GATGAACAAGCCATTCTAGACAGTAAAGTTTTAAGTTTATTGACATGGTCATCACAATATTATCAATTTCCTATCGGCGA
AGTGATTCAAACGGCGTTACCTACCTTATTACGCCAAGGTAAACCTTATAATTTATTGGCACGTATCTGGAAACTGTTAG
ACTTACATGCCGAAGACAAAGTTAAGCGTTCTGAAAAACAACAAGAAGCCTATAAAATTTTAAAGCTACACCCGAAAGGG
ACACAGGAAAATATTCTTAATCTAAGTGGTGTTGAAACAGCCACACTCAAAATCCTTGAGAAAAAAGACATTGTTCGTTG
TGATTTAGAACCACAAAATGTCACGCCAGAACCTGTGCAATTGGCACAGATGCCCCTCACGCCAAATGACGATCAGAAGA
AAGCCATTCAAGCGATTTTAAAAGCGCAAAAAAAATATCAAGCGTTTCTACTGGATGGTTTAACTGGGAGTGGTAAAACC
GAAGTTTATTTGCAAGTGATGCATGAAGTACTTAAACAAGGCAAACAAGTTCTGGTTTTAGTGCCTGAAATTGGCTTAAC
CCCACAAACCATCAGCCGTTTCCAATCACGTTTTCATTGCAATATTGCCTTACTACATTCAGGGTTAAATGACACTAAAC
GTTTACAAGCATGGCAGCATGCGCAAACGGGCAAAGCCTCTATTATTTTAGGTACACGTTCTGCAATTTATACGCCTTTG
CCGCATTTGGGTTTGATTATTTTAGATGAAGAGCATGATCTTTCGTTTAAACAGCAAGAAGGCTTCCGCTATCATGCTCG
CGATGTGGCCATGTATCGTGCACATTTAGAAAATTGCCCGATTATTTTAGGTTCGGCCACACCAAGCATCGACAGTTATT
ATCTTGCTCGCCAAGAAAAGCTGACACGGATTGAGTTAAATCAACGTGCTGGTGCCGCAATCATGCCGAAAATGCATTTG
ATTGATTTAAAAGTGGCAAAAAAACAGCATGGCTTAAGTGATGTTTTGATTGCTGAAATCAAAAAACGTTTAGAGAAAAA
AGAACAAGTTCTGATTTTTTTAAATCGCCGCGGTTATGCCCCTGTGCTTATCTGTGAAAGCTGTGGTTGGCAGGCCAATT
GCCCCAATTGCGATGCTCACTTTACCCTGCATTTAAAGCCTTATCAGCATTTACATTGTCATCATTGTGGCACGATTAAT
CGTATGCCTGATGCTTGCCCTCAATGCAATCAACAACAATTAAAGCCTATCGGCATGGGAACCGCCAAAGTTGAAGAAAC
TTTGAATGAGTTGTTCCCTCATTTCCCCGTCCTACGCGTAGACCGTGACTCAACCAGTCGGGTTGGTAGTTGGCAAAAGA
TTTATGATCAAATCCAAAAAAGTGAACCGACCATTTTACTTGGTACTCAAATGCTGGCAAAAGGACATCACTTTCCTTAT
GTCACCTTAGTGGCAATTTTGGATATCGATGCAGGTTTGTTGAGTGTGGATTTCCGTGCTACAGAACGTACTGCGCAATT
GATTATTCAAGTTGCAGGCCGTGCGGGTCGTGGTGAAATGAAGGGGGAAGTCTATTTACAAACCCTAAGACCTGATCATC
CGTTATTAAACACCTTGATTCATAATGACTATCGGACCTTTGCTAAACAAACCTTAAAAGATCGCCAAGCCGCACTGCTT
CCACCCTTTCGTTATACAGCTTTGATCCGCTGTGATTCAAAGCATCAGGAAGAAAATTTAAAGTTTCTGACTGAAATGAC
GCAGCTCCTTAGACAAACTGCTGAAGAGAATTTAATTGATATTTGGGGACCGATTCCAGCTCCGATGGAGCGTAAAGCAG
GTCGTTACCAAGCCCATGTGGTTTTGCTTTCTCAAGATCGGGCAAAAATGCATTTTTATATTCGTCAATGGTGGCAACAG
CTGTTACATAGCAAACCCTCTACGATGAAAGTCACCATAGATGTTGATCCGCAAGAGTTGAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Helicase conserved C-terminal domain (Helicase_C)

(532-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.275

100

0.725