Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   VJ143_RS01170 Genome accession   NZ_CP142740
Coordinates   250160..250486 (+) Length   108 a.a.
NCBI ID   WP_004718506.1    Uniprot ID   A0A077KSH9
Organism   Acinetobacter guillouiae strain 13-3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 245160..255486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS01145 (VJ143_01145) hemC 245743..246666 (+) 924 WP_056517319.1 hydroxymethylbilane synthase -
  VJ143_RS01150 (VJ143_01150) - 246680..247462 (+) 783 WP_151956246.1 uroporphyrinogen-III synthase -
  VJ143_RS01155 (VJ143_01155) - 247459..248289 (+) 831 WP_327858000.1 hypothetical protein -
  VJ143_RS01160 (VJ143_01160) - 248294..249487 (+) 1194 WP_327858001.1 heme biosynthesis protein HemY -
  VJ143_RS01165 (VJ143_01165) - 249497..249934 (+) 438 WP_327858002.1 thioesterase family protein -
  VJ143_RS01170 (VJ143_01170) hns 250160..250486 (+) 327 WP_004718506.1 H-NS family nucleoid-associated regulatory protein Regulator
  VJ143_RS01175 (VJ143_01175) gspN 250650..251393 (+) 744 WP_004718504.1 type II secretion system protein N -
  VJ143_RS01180 (VJ143_01180) - 251393..252238 (+) 846 WP_327858003.1 type II secretion system protein N -
  VJ143_RS01185 (VJ143_01185) gspD 252280..254526 (+) 2247 WP_327858004.1 type II secretion system secretin GspD -
  VJ143_RS01190 (VJ143_01190) - 255028..255360 (+) 333 WP_004818500.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12384.15 Da        Isoelectric Point: 8.4038

>NTDB_id=926629 VJ143_RS01170 WP_004718506.1 250160..250486(+) (hns) [Acinetobacter guillouiae strain 13-3]
MMPDISNLSVEELRKLTAEAEALIESKKDQAVEDAYNKIIEIAQSAGLTLEQFIEYGAQKRKKTTRKAVEPRYRNKKDTS
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=926629 VJ143_RS01170 WP_004718506.1 250160..250486(+) (hns) [Acinetobacter guillouiae strain 13-3]
ATGATGCCTGATATTAGTAATTTATCGGTTGAAGAGTTAAGAAAGTTAACAGCTGAAGCAGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAGTTGAAGATGCCTATAATAAAATTATTGAAATTGCCCAATCTGCTGGTTTAACTTTAGAACAGTTTA
TTGAATACGGCGCGCAAAAGCGTAAAAAGACAACGCGTAAAGCTGTTGAGCCGCGTTACCGCAATAAAAAAGATACTTCT
GAAACTTGGACTGGACGCGGTAAACAACCACGTTGGTTGGTTGCAGAAATCGAAAAAGGTGCAAAATTAGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077KSH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787