Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB5L52_RS05625 Genome accession   NZ_CP163525
Coordinates   1214990..1217320 (+) Length   776 a.a.
NCBI ID   WP_369362818.1    Uniprot ID   -
Organism   Streptomyces sp. CG4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1209990..1222320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5L52_RS05590 (AB5L52_05590) - 1210371..1210826 (+) 456 WP_351022586.1 archease -
  AB5L52_RS05595 (AB5L52_05595) - 1210942..1212354 (-) 1413 WP_369362815.1 RtcB family protein -
  AB5L52_RS05600 (AB5L52_05600) - 1212370..1212870 (-) 501 WP_351022591.1 DUF6328 family protein -
  AB5L52_RS05605 (AB5L52_05605) - 1213023..1213193 (+) 171 WP_351022594.1 hydrophobic protein -
  AB5L52_RS05610 (AB5L52_05610) ligD 1213204..1214136 (+) 933 WP_369362816.1 non-homologous end-joining DNA ligase -
  AB5L52_RS05615 (AB5L52_05615) - 1214270..1214521 (+) 252 WP_369362817.1 DUF5133 domain-containing protein -
  AB5L52_RS05620 (AB5L52_05620) - 1214769..1214957 (+) 189 WP_351022600.1 antitoxin -
  AB5L52_RS05625 (AB5L52_05625) uvrA 1214990..1217320 (+) 2331 WP_369362818.1 ABC transporter Machinery gene
  AB5L52_RS05630 (AB5L52_05630) - 1217296..1218246 (-) 951 WP_369362819.1 lysophospholipid acyltransferase family protein -
  AB5L52_RS05635 (AB5L52_05635) - 1218246..1219016 (-) 771 WP_351022608.1 GNAT family N-acyltransferase -
  AB5L52_RS05640 (AB5L52_05640) - 1219274..1220023 (-) 750 WP_369362820.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  AB5L52_RS05645 (AB5L52_05645) - 1220020..1221969 (-) 1950 WP_351568383.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 82728.71 Da        Isoelectric Point: 6.4236

>NTDB_id=926574 AB5L52_RS05625 WP_369362818.1 1214990..1217320(+) (uvrA) [Streptomyces sp. CG4]
MHSPPDQYIRVRGAREHNLKGVDVDIPRDVLAVFTGVSGSGKSSLAFGTIFAEAQRRYFESVAPYARRLIHQVGAPKVGE
ITGLPPAVSLQQRRSAPTSRSSVGTVTNLSNSLRMLFSRAGEYPPGAQRLESDAFSPNTAAGACPECHGLGQVHGTTEEL
LVPDPGLSIREGAIAAWPGAWQGKNLRDILDTLGHDVDRPWRELPAGAREWILFTDEQPVVTVHPVRDADRIQRPYQGTY
MSARRYVLKTFSDTKSASLRAKAERFLTSAPCPVCGGSRLRPEALAVTFGGRTIAELAALPLTDLATLLDGRDEAARVLT
EDLKSRIAPVAELGLGYLSLDRPTPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALMTVLARLKAAGNS
VFVVEHHLEVVRGADWLVDVGPGAGEHGGRVLYSGPPAELASVAESATAAFLFDESPGPAREVRQPRGWLTVGPVTRHNL
RAVTAEFPLGAFTAVTGVSGSGKSTLIGELSEDVEGVDRLVRVDQRPIGRTPRSNLATYTGLFDVVRKVFAGTEEARARG
YGVGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCGGARYHPETLQVTYRERNIAEVLDLTVEAAAEFFGDIPA
AARSLGALLDVGLGYLRLGQPATELSGGEAQRIKLASELQRGRRGHTLYLLDEPTTGLHPADVELLMERLHGLVDAGHTV
VVVEHDMTVVAGADWVVDLGPGGGDRGGRIVAAGPPERVASAAGSATGPYLARVLP

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=926574 AB5L52_RS05625 WP_369362818.1 1214990..1217320(+) (uvrA) [Streptomyces sp. CG4]
ATGCACAGCCCTCCTGACCAGTACATCCGCGTCCGCGGCGCCCGCGAACACAATCTCAAAGGCGTCGACGTCGACATCCC
CCGCGACGTCCTGGCCGTGTTCACCGGTGTGTCCGGCTCGGGGAAGTCGTCCCTGGCGTTCGGCACGATCTTCGCCGAGG
CGCAGCGGCGGTACTTCGAGTCCGTGGCGCCGTATGCGCGCAGGCTGATCCACCAGGTCGGGGCGCCGAAGGTCGGCGAG
ATCACCGGGCTGCCGCCGGCGGTCTCGCTGCAGCAGCGCCGCTCGGCCCCCACCTCCCGCTCCTCGGTGGGCACGGTCAC
CAACCTCTCCAACTCCCTGCGCATGCTGTTCTCGCGCGCCGGGGAGTATCCGCCGGGCGCCCAGCGGCTCGAATCCGACG
CGTTCTCGCCGAACACGGCGGCCGGGGCCTGCCCGGAGTGCCACGGGCTGGGTCAAGTGCACGGCACCACCGAGGAGTTG
CTGGTCCCGGATCCCGGGCTGTCCATCCGGGAGGGCGCCATCGCCGCCTGGCCGGGCGCCTGGCAGGGCAAGAACCTGCG
GGACATCCTCGACACGCTCGGCCACGACGTGGACCGGCCCTGGCGCGAGCTGCCCGCCGGGGCGCGGGAGTGGATCCTGT
TCACGGACGAGCAGCCGGTGGTCACCGTCCACCCCGTCCGGGACGCGGACCGTATCCAACGGCCGTACCAGGGCACGTAC
ATGAGCGCCCGCCGGTATGTGCTCAAGACGTTCTCGGACACCAAGTCGGCCTCGCTGCGGGCGAAGGCGGAGCGGTTCCT
GACCAGCGCGCCCTGCCCGGTGTGCGGGGGCAGCCGGCTGCGGCCCGAGGCGCTCGCGGTGACCTTCGGCGGCCGGACCA
TCGCCGAGCTGGCCGCGCTGCCGCTGACCGACCTCGCCACACTGCTCGACGGCAGGGACGAAGCCGCCCGGGTGCTGACC
GAGGACCTGAAGTCCCGGATCGCGCCCGTGGCCGAGCTGGGCCTCGGCTATCTGAGCCTGGACCGGCCGACGCCCACCCT
GTCCGCGGGTGAGCTGCAACGGCTGCGGCTCGCCACGCAGTTGCGTTCCGGGCTGTTCGGCGTGGTGTACGTGCTGGACG
AGCCGTCCGCCGGACTGCACCCGGCGGACACCGAGGCGCTGATGACCGTGCTGGCGCGGCTGAAGGCCGCGGGCAACTCG
GTGTTCGTGGTCGAGCATCACCTGGAGGTGGTGCGCGGCGCCGACTGGCTGGTGGACGTCGGGCCCGGCGCGGGCGAGCA
CGGCGGGCGCGTGCTGTACAGCGGCCCGCCGGCCGAGCTGGCGTCGGTGGCGGAGTCGGCGACGGCCGCGTTCCTCTTCG
ACGAGTCGCCGGGCCCGGCGCGTGAAGTCCGACAGCCGCGTGGCTGGTTGACGGTGGGTCCGGTGACCCGGCACAACCTG
CGCGCGGTGACGGCGGAGTTCCCGCTCGGCGCGTTCACCGCCGTCACCGGGGTCTCCGGCTCCGGGAAGTCCACGCTGAT
CGGCGAGTTGAGTGAGGACGTCGAGGGCGTCGACCGTCTTGTCCGGGTCGACCAGCGGCCGATCGGGCGCACCCCGCGCT
CCAACCTGGCCACCTACACGGGCCTGTTCGACGTCGTCCGCAAGGTGTTCGCCGGCACCGAGGAGGCGCGGGCCCGCGGG
TACGGGGTCGGCCGGTTCTCCTTCAACGTGGCCGGAGGGCGCTGCGAGACGTGTCAGGGCGAGGGGTTCGTCAGCGTCGA
GCTGCTGTTCCTGCCGAGCACCTACGCGCCCTGCCCGGACTGCGGCGGCGCCCGCTATCACCCCGAGACGCTCCAGGTGA
CGTACCGGGAGCGGAACATCGCCGAGGTGCTCGATCTGACGGTGGAGGCTGCGGCGGAGTTCTTCGGCGACATCCCGGCC
GCCGCCCGGAGCCTTGGCGCCCTGCTCGACGTGGGTCTCGGCTATCTGCGGCTCGGGCAGCCGGCGACCGAGCTGTCCGG
CGGGGAGGCCCAGCGGATCAAGCTGGCGAGCGAATTGCAGCGCGGCCGGCGCGGCCACACCCTGTATCTGCTGGACGAGC
CGACGACCGGGCTGCACCCGGCCGACGTGGAGCTGCTGATGGAGCGGCTGCACGGGCTGGTGGACGCCGGGCACACGGTC
GTGGTGGTGGAGCACGACATGACGGTGGTCGCGGGCGCCGACTGGGTGGTCGACCTGGGCCCCGGCGGGGGTGACCGGGG
CGGCCGGATCGTGGCGGCCGGCCCGCCGGAGCGGGTCGCCTCGGCGGCGGGCAGTGCGACGGGTCCTTATCTGGCGCGGG
TGTTGCCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-265)

ABC transporter (ABC_tran)

(481-695)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

43.338

88.015

0.381
  uvrA Streptococcus pneumoniae TIGR4

43.338

88.015

0.381
  uvrA Streptococcus pneumoniae D39

43.338

88.015

0.381