Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   U9988_RS10855 Genome accession   NZ_CP142723
Coordinates   2256231..2256866 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain LXZ1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2251231..2261866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9988_RS10840 - 2251937..2253181 (+) 1245 WP_023085389.1 lipoprotein-releasing ABC transporter permease subunit -
  U9988_RS10845 - 2253269..2253802 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  U9988_RS10850 comA 2253933..2256158 (+) 2226 WP_003143665.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U9988_RS10855 exbB 2256231..2256866 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U9988_RS10860 - 2256863..2257303 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  U9988_RS10865 lpxK 2257303..2258301 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  U9988_RS10870 - 2258339..2258524 (+) 186 WP_003091157.1 Trm112 family protein -
  U9988_RS10875 kdsB 2258524..2259288 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U9988_RS10880 - 2259288..2259752 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  U9988_RS10885 murB 2259749..2260768 (+) 1020 WP_016263276.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=926567 U9988_RS10855 WP_003091163.1 2256231..2256866(+) (exbB) [Pseudomonas aeruginosa strain LXZ1]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=926567 U9988_RS10855 WP_003091163.1 2256231..2256866(+) (exbB) [Pseudomonas aeruginosa strain LXZ1]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81