Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VDS59_RS07155 Genome accession   NZ_CP142716
Coordinates   1445880..1447685 (-) Length   601 a.a.
NCBI ID   WP_024855562.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain A156     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1440880..1452685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS59_RS07130 (VDS59_07115) - 1441483..1442382 (-) 900 WP_011668196.1 RluA family pseudouridine synthase -
  VDS59_RS07135 (VDS59_07120) - 1442379..1443182 (-) 804 WP_021740943.1 NAD kinase -
  VDS59_RS07140 (VDS59_07125) - 1443184..1443843 (-) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  VDS59_RS07145 (VDS59_07130) - 1444157..1444795 (+) 639 WP_011668199.1 ClpXP adapter SpxH family protein -
  VDS59_RS07150 (VDS59_07135) - 1444958..1445821 (+) 864 WP_011668200.1 DegV family protein -
  VDS59_RS07155 (VDS59_07140) pepF 1445880..1447685 (-) 1806 WP_024855562.1 oligoendopeptidase F Regulator
  VDS59_RS07160 (VDS59_07145) - 1447752..1448846 (-) 1095 WP_107696607.1 competence protein CoiA -
  VDS59_RS07165 (VDS59_07150) trmB 1448973..1449620 (-) 648 WP_015473913.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  VDS59_RS07170 (VDS59_07155) - 1449686..1450477 (-) 792 WP_011668204.1 phosphotransferase family protein -
  VDS59_RS07175 (VDS59_07160) - 1450539..1451765 (-) 1227 WP_011668205.1 ABC transporter permease -
  VDS59_RS07180 (VDS59_07165) - 1451762..1452496 (-) 735 WP_011668206.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67159.29 Da        Isoelectric Point: 4.8810

>NTDB_id=926550 VDS59_RS07155 WP_024855562.1 1445880..1447685(-) (pepF) [Levilactobacillus brevis strain A156]
MKQIPKRSEVPTALTWDLTTIFPDEAAFKTAIAAIKAQITVVAGLKGQLAQSGVALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNDPRLADYQHVFDVLGQQRAHTLSVAEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNEHLDSLHRYVNLRKEILALPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSA
LPLDVMKQAGVDMTQPGYLQTAFATFDERLAEFTQLAHELK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=926550 VDS59_RS07155 WP_024855562.1 1445880..1447685(-) (pepF) [Levilactobacillus brevis strain A156]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCACGGCACTGACTTGGGACCTGACAACTATTTTTCCCGACGAAGCAGC
TTTTAAGACCGCAATTGCCGCGATTAAAGCGCAAATAACGGTTGTGGCCGGCTTGAAGGGACAATTGGCCCAAAGTGGGG
TCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCGGCCCAAGCATTAATGGGGCAGGCCGAGAGCTTGGTGGCAACTGTGGGTGCCGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCCTTGTCAGCGGATCAGCTGCAAACGCTGATTGATAACGACCCCCGGCTGG
CAGATTATCAGCATGTGTTTGACGTATTGGGCCAGCAACGGGCACATACGCTGTCAGTGGCGGAGGAAAAATTGTTAGCG
GGGGCTAGTGATATCTTTGGTGCATCTGCTAAAACTTATAGTGTGCTGAGTGATGCTGATCTAAAGTTTCCGGTTGTTCA
AGACGAGGCCGGCAACGATGTGCGACTGTCAGAAGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCCTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCTGCAACCTTGGCGAGTGAAGTCAAA
ACGCATAATTTTAGCGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCCGCAATGAGTCGCAACAATGTGCCAGCAGT
GGTCTATGATACCTTGGTGGAAACAGTCAATGAGCATTTAGACTCGCTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGCCTTGCCGCAACTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTTTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGTCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAGCGAACGGGCGCTTACTCAGGCGGGATGTATGATACCAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTATCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTACGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAGACGCAGTTTGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACA
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGCGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCTACGA
CGTTATCGCAACGAATTTTGAGTGGCGACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCGGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGTTTGGCAGAATTCACGCAATTGGCGCATGAATTAAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-584)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.17

0.491