Detailed information NTG0926519

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB5J89_RS17730
• Genome accession: NZ_CP163523
• Coordinates: 3987754..3988755 (-)
• Length: 333 a.a.
• NCBI ID: WP_221905254.1
• Uniprot ID: -
• Organism: Streptomyces sp. cg2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3982754..3993755

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J89_RS17715 (AB5J89_17715)	-	3983472..3985499 (-)	2028	WP_369357181.1	fructose-specific PTS transporter subunit EIIC	-
AB5J89_RS17720 (AB5J89_17720)	pfkB	3985492..3986508 (-)	1017	WP_221905253.1	1-phosphofructokinase	-
AB5J89_RS17725 (AB5J89_17725)	-	3986595..3987365 (-)	771	WP_221909416.1	DeoR/GlpR family DNA-binding transcription regulator	-
AB5J89_RS17730 (AB5J89_17730)	rpoS	3987754..3988755 (-)	1002	WP_221905254.1	RNA polymerase sigma factor RpoD/SigA	Regulator
AB5J89_RS17735 (AB5J89_17735)	-	3988941..3989459 (+)	519	WP_369357182.1	N-acetyltransferase family protein	-
AB5J89_RS17740 (AB5J89_17740)	-	3989596..3990171 (+)	576	WP_352295451.1	DMT family transporter	-
AB5J89_RS17745 (AB5J89_17745)	-	3990268..3990777 (+)	510	WP_221905257.1	PPOX class F420-dependent oxidoreductase	-
AB5J89_RS17750 (AB5J89_17750)	-	3990722..3991363 (-)	642	WP_369357184.1	pyridoxamine 5'-phosphate oxidase family protein	-
AB5J89_RS17755 (AB5J89_17755)	-	3991668..3992720 (+)	1053	WP_221905258.1	questin oxidase family protein	-
AB5J89_RS17760 (AB5J89_17760)	-	3993074..3993574 (+)	501	WP_221905259.1	MarR family winged helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 36876.24 Da
• Isoelectric Point: 4.6644

>NTDB_id=926519 AB5J89_RS17730 WP_221905254.1 3987754..3988755(-) (rpoS) [Streptomyces sp. cg2]
MATRAVARRQASTTGSGEANSVRAAGGDIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAQQILDGEITDTDAA
GASREELEALAAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPEEVAGELGSTAARVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAASPEQSVLTLLRSEELEDLIDRLDQRTASIIKARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLEL
KRMARDTGFDAAA

Nucleotide

• Length: 1002 bp

>NTDB_id=926519 AB5J89_RS17730 WP_221905254.1 3987754..3988755(-) (rpoS) [Streptomyces sp. cg2]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGGCCAGCACCACCGGCTCTGGCGAGGCCAACAGCGTTCGCGCAGCAGGCGG
AGACATCGCCGACCGCGACCTGGTGGGCATGTATCTCGACGAGATCGCGCGCACGCCCCTGCTGGACGCCGCCAAGGAGG
TGGAGCTGTCGCAGACCATCGAGGCCGGGGTCTACGCCCAGCAGATCCTGGACGGCGAGATCACCGACACCGACGCCGCG
GGTGCGAGCCGCGAGGAGCTCGAAGCGCTCGCCGCCGAGGGCGAGCGGGCCAAGGACGTCTTCATCCGGTCCAACCTCCG
TCTGGTCGTCGCCGTGGCCCGCCGCTACCCGCGCTCCGGCCTCCCCCTGCTGGATCTGATCCAGGAGGGCAACGCCGGCT
TGGTGCGCGCCGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTACGCGACGTGGTGGATCCGCCAGGCC
ATCACCCGTTCCATCGCCGACCAGTCGCGCACGATCCGGCTCCCCGTCCACCTCGTGGAGGAGCTCGGCCGGATCCGCCG
GGTCCAGCGCGAGTTCAACCGCGAGAACGGCCGCGACCCGGAGCCCGAGGAGGTGGCCGGCGAGCTGGGTTCCACGGCCG
CCCGCGTCACCGACGTCCTGGACTGGGCCCGCGACCCGGTCAGTCTCAACATGTCGGTGGACGACGACGGCGACACCCAG
TTCGGCGACCTGCTGGAGGACACCTCCGCCGCCTCCCCCGAGCAGTCCGTGCTCACGCTGCTGCGCAGCGAGGAGCTGGA
GGATCTGATCGACCGCCTCGACCAGCGCACCGCGTCGATCATCAAGGCGCGCTACGGCATCGAGGACGGCCGCGAGCGCA
CGCTGACGGAGGTCGGCAAGCAGCACGGCCTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTG
AAGCGGATGGCGCGCGACACCGGGTTCGACGCGGCGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (101-170)

• Sigma-70, region 4 (Sigma70_r4) (270-321)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (33-66)

• Sigma-70 region 3 (Sigma70_r3) (180-256)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.199	90.39	0.363