Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J87_RS24050 Genome accession   NZ_CP163520
Coordinates   5449598..5451331 (-) Length   577 a.a.
NCBI ID   WP_369379176.1    Uniprot ID   -
Organism   Streptomyces sp. cg36     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5444598..5456331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J87_RS24040 (AB5J87_24040) - 5446379..5447611 (+) 1233 WP_369379173.1 RNA polymerase sigma factor -
  AB5J87_RS24045 (AB5J87_24045) rcrQ 5447676..5449601 (-) 1926 WP_369379175.1 ABC transporter ATP-binding protein Regulator
  AB5J87_RS24050 (AB5J87_24050) rcrP 5449598..5451331 (-) 1734 WP_369379176.1 ABC transporter ATP-binding protein Regulator
  AB5J87_RS24055 (AB5J87_24055) - 5451557..5453002 (-) 1446 WP_369379177.1 FGGY-family carbohydrate kinase -
  AB5J87_RS24060 (AB5J87_24060) - 5453057..5453377 (-) 321 WP_369379178.1 YtxH domain-containing protein -
  AB5J87_RS24080 (AB5J87_24080) - 5454227..5455078 (-) 852 WP_369379179.1 DUF6415 family natural product biosynthesis protein -
  AB5J87_RS24085 (AB5J87_24085) - 5455205..5456056 (+) 852 WP_369379180.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62634.78 Da        Isoelectric Point: 5.7499

>NTDB_id=926466 AB5J87_RS24050 WP_369379176.1 5449598..5451331(-) (rcrP) [Streptomyces sp. cg36]
MLIRLLRTHLVPYKKPIAFLVLLQLLQTCATLYLPTLNADIIDNGVVSGDTGYILEFGGVMIAVSLVQVVCNVGAVYFGA
RTAAAVGRDMRAAVFARVQSFSAREVGHFGAPSLITRTTNDVQQVQMLTLMSFTLMVSAPIMCFGGIIMALGQDVPLSAV
LLAVVPVLGVCVSLIVRKMRPLFRTMQTRLDTVNRVLREQITGNRVIRAFVKDDYEQGRFRGANTELTDVSLGTGRLMAL
MFPTVMTVVNVSSVAVVWFGAHRIDNGSLQIGQLTAFLTYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTETSVVP
PKAPVVELRRSGHLEVRGADFTYPGAEEAVLNGVELVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGAVLVDGEDVR
TLDPALLAKTVSMVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVGKLEGGLNAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALLRETREATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAEN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=926466 AB5J87_RS24050 WP_369379176.1 5449598..5451331(-) (rcrP) [Streptomyces sp. cg36]
GTGCTCATACGACTGCTGCGAACCCATCTGGTTCCGTACAAGAAACCGATCGCGTTCCTGGTGCTCCTCCAGCTGCTCCA
GACGTGCGCGACCCTCTATCTGCCGACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAGCGGGGACACCGGATACA
TCCTGGAGTTCGGCGGTGTCATGATCGCCGTCAGCCTGGTCCAGGTCGTCTGCAACGTCGGCGCCGTCTACTTCGGCGCC
CGCACGGCCGCCGCGGTCGGCCGGGACATGCGCGCCGCCGTGTTCGCGCGGGTGCAGTCCTTCTCCGCGCGCGAGGTGGG
CCACTTCGGGGCGCCGTCCCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGACGCTGATGTCGTTCA
CCCTGATGGTGTCCGCGCCGATCATGTGCTTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTCTCCGCGGTG
CTGCTGGCCGTGGTGCCGGTGCTCGGCGTCTGCGTCTCGCTGATCGTGCGCAAGATGCGTCCGCTGTTCCGGACCATGCA
GACCCGCCTCGACACGGTCAACCGCGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCAGGGCGTTCGTGAAGGACG
ACTACGAGCAGGGCCGCTTCCGCGGCGCCAACACCGAGCTCACCGACGTCTCGCTCGGCACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACGGTGATGACCGTCGTGAACGTCTCGTCGGTCGCGGTGGTCTGGTTCGGCGCGCACCGCATCGACAACGG
CTCGCTGCAGATCGGCCAGCTCACCGCGTTCCTCACGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCGAGGAGGTGCTGGACACCGAGACGAGCGTGGTGCCG
CCGAAGGCCCCCGTCGTCGAGCTGCGCCGCAGCGGCCACCTGGAGGTGCGCGGCGCCGACTTCACCTATCCGGGCGCCGA
GGAGGCCGTGCTCAACGGGGTGGAGCTGGTGGCCCGCCCGGGCGAGACCACCGCGATCATCGGGTCGACCGGCAGCGGCA
AGTCGACGCTGCTCGGTCTCGTACCGAGGCTGTTCGACGTGACGGACGGGGCGGTGCTCGTCGACGGCGAGGACGTGCGG
ACCCTGGATCCCGCGCTGCTCGCCAAGACGGTGTCGATGGTCCCGCAGAAGCCGTACCTCTTCTCCGGGACGGTCGCGAC
CAACCTGCGGTACGGGAACCCGGACGCCACCGACGAGGAGCTCTGGCACGCGCTGGAGGTCGCCCAGGCCAAGGAGTTCG
TCGGCAAGCTGGAGGGCGGGCTGAACGCGCCGATCTCCCAGGGCGGCACCAATGTCTCCGGCGGCCAGCGCCAGCGCCTG
GCGATCGCCCGGACCCTGGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTCGACTACGCGACGGA
CGCGGCCCTGCGGGCGGCGCTGCTGCGCGAGACGCGCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCCGCCACCACGAGCTGATGGCCGAGAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCCGAGGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.033

100

0.392