Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB5J87_RS24045 Genome accession   NZ_CP163520
Coordinates   5447676..5449601 (-) Length   641 a.a.
NCBI ID   WP_369379175.1    Uniprot ID   -
Organism   Streptomyces sp. cg36     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5442676..5454601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J87_RS24030 (AB5J87_24030) - 5442977..5444257 (+) 1281 WP_369379171.1 NAD(P)/FAD-dependent oxidoreductase -
  AB5J87_RS24035 (AB5J87_24035) dnaG 5444337..5446229 (+) 1893 WP_369379172.1 DNA primase -
  AB5J87_RS24040 (AB5J87_24040) - 5446379..5447611 (+) 1233 WP_369379173.1 RNA polymerase sigma factor -
  AB5J87_RS24045 (AB5J87_24045) rcrQ 5447676..5449601 (-) 1926 WP_369379175.1 ABC transporter ATP-binding protein Regulator
  AB5J87_RS24050 (AB5J87_24050) rcrP 5449598..5451331 (-) 1734 WP_369379176.1 ABC transporter ATP-binding protein Regulator
  AB5J87_RS24055 (AB5J87_24055) - 5451557..5453002 (-) 1446 WP_369379177.1 FGGY-family carbohydrate kinase -
  AB5J87_RS24060 (AB5J87_24060) - 5453057..5453377 (-) 321 WP_369379178.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69305.64 Da        Isoelectric Point: 5.9561

>NTDB_id=926465 AB5J87_RS24045 WP_369379175.1 5447676..5449601(-) (rcrQ) [Streptomyces sp. cg36]
MSGHMARMMGQGDGKRSMDFKGSAKRLLRQLAPEKGTLYVMLVAAVLSVALSVVGPKILGKATDLVFAGVVGRQMPDGTT
KAQALDRLRAKGDGGLADMLSGVDFTPGHGIDFGSVGSVLLVALAVYVGAGLAMLVATRLSNRAINRTVFRMREQVQAKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLAMMFWISPLLALVALATVPLSVFVATKVGKR
SQPQFVQQWKTTGRLNAHVEEMYTGHSLVKVFGRQEESARQFAEQNEELYEAGFKAQFNSGVMQPLMMFISNLNYVLVAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEPDAASAERPVERRGAVTLEK
VSFRYEPEKPLIDDLSLKVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTDGRITLDGVDAARMSRQELRAGIGMVLQDTW
LFGGTIADNIAYGADRPVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGAIVEQGSHDELLAADGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=926465 AB5J87_RS24045 WP_369379175.1 5447676..5449601(-) (rcrQ) [Streptomyces sp. cg36]
ATGAGCGGACACATGGCCCGGATGATGGGCCAGGGCGACGGCAAGCGCTCGATGGACTTCAAGGGGTCCGCGAAGCGGCT
GCTCAGACAACTCGCGCCGGAGAAGGGCACGCTCTATGTGATGCTCGTGGCGGCCGTGCTCAGCGTGGCGCTCTCGGTGG
TCGGGCCGAAGATCCTCGGCAAGGCGACCGACCTGGTCTTCGCGGGCGTGGTCGGCCGGCAGATGCCGGACGGGACGACC
AAGGCGCAGGCGCTGGACCGGCTGCGCGCCAAGGGCGACGGCGGCCTCGCCGACATGCTCTCCGGGGTGGACTTCACCCC
CGGCCACGGCATCGACTTCGGCTCGGTCGGCAGCGTGCTGCTGGTCGCGCTCGCGGTGTACGTGGGCGCGGGCCTGGCGA
TGCTGGTGGCGACCCGGCTCTCCAACCGGGCGATCAACCGCACGGTGTTCCGGATGCGCGAGCAGGTGCAGGCGAAGCTC
TCGCGGCTGCCGCTGTCCTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCCACCAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTGACGATCGTCGGCGTGCTCGCGATGATGTTCT
GGATCTCTCCGCTGCTGGCCCTGGTGGCGCTGGCGACCGTACCGCTGTCGGTGTTCGTGGCGACCAAGGTCGGCAAGCGC
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGACCACCGGGCGGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCACAG
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCGGCGCGGCAGTTCGCCGAGCAGAACGAGGAGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCGCTGATGATGTTCATCTCGAACCTGAACTACGTGCTGGTCGCGGTG
GTCGGCGGACTGCGGGTGGCCTCGGGGTCGCTGTCGATCGGCGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTCACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCCTCCGCCGAGCGGATCTTCGAGCTGC
TCGACGCGGACGAGCAGGAGCCGGACGCGGCCTCGGCCGAGCGGCCGGTGGAGCGGCGCGGCGCGGTGACGCTGGAGAAG
GTCTCGTTCCGCTACGAGCCGGAGAAGCCCCTCATCGACGATCTGTCGCTGAAGGTCGAGCCGGGCCAGACCGTCGCCAT
CGTCGGCCCGACCGGCGCGGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGACGGGCGGATCA
CCCTGGACGGGGTGGACGCGGCCCGGATGTCCCGCCAGGAGCTGCGCGCGGGCATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGCACCATCGCGGACAACATCGCGTACGGCGCGGACCGGCCGGTGACGCGCGAGGAGATCGAGGAGGCGGC
CCGCGCGGCGCACGCCGACCGGTTCGTGCGCACGCTGCCCGACGGGTACGACACCGTGATCGACGACGAGGGCACGGGGG
TGAGCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAGGCG
ACGAGTTCGGTGGACACCCGGACGGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGCCGTACGTCCTTCGT
GATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTCATCCTCGTGATGGAGAACGGCGCGATCGTGGAGCAGGGCT
CGCACGACGAACTGCTGGCCGCCGACGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCCCAGGCGGTGGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(413-562)

ABC transporter transmembrane region (ABC_membrane)

(40-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.871

97.036

0.387