Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AB5J87_RS10125 Genome accession   NZ_CP163520
Coordinates   2310418..2312625 (-) Length   735 a.a.
NCBI ID   WP_369376048.1    Uniprot ID   -
Organism   Streptomyces sp. cg36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2305418..2317625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J87_RS10095 (AB5J87_10095) rnc 2306247..2307080 (-) 834 WP_369376044.1 ribonuclease III -
  AB5J87_RS10100 (AB5J87_10100) rpmF 2307100..2307273 (-) 174 WP_101390332.1 50S ribosomal protein L32 -
  AB5J87_RS10105 (AB5J87_10105) - 2307276..2307962 (-) 687 WP_369376045.1 DUF177 domain-containing protein -
  AB5J87_RS10110 (AB5J87_10110) - 2308075..2309139 (-) 1065 WP_369376046.1 DivIVA domain-containing protein -
  AB5J87_RS10115 (AB5J87_10115) coaD 2309236..2309718 (-) 483 WP_369383454.1 pantetheine-phosphate adenylyltransferase -
  AB5J87_RS10120 (AB5J87_10120) rsmD 2309739..2310323 (-) 585 WP_369376047.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB5J87_RS10125 (AB5J87_10125) recG 2310418..2312625 (-) 2208 WP_369376048.1 ATP-dependent DNA helicase RecG Machinery gene
  AB5J87_RS10130 (AB5J87_10130) - 2312687..2314276 (-) 1590 WP_369383455.1 DAK2 domain-containing protein -
  AB5J87_RS10135 (AB5J87_10135) rpmB 2314569..2314754 (+) 186 WP_003957616.1 50S ribosomal protein L28 -
  AB5J87_RS10140 (AB5J87_10140) thiD 2314837..2315637 (-) 801 WP_369376049.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AB5J87_RS10145 (AB5J87_10145) - 2315634..2316596 (-) 963 WP_369376050.1 thiamine-phosphate kinase -
  AB5J87_RS10150 (AB5J87_10150) - 2316845..2317078 (+) 234 WP_064070330.1 Lrp/AsnC family transcriptional regulator -
  AB5J87_RS10155 (AB5J87_10155) - 2317099..2317581 (+) 483 WP_369376051.1 DUF3515 domain-containing protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 79509.06 Da        Isoelectric Point: 6.1709

>NTDB_id=926427 AB5J87_RS10125 WP_369376048.1 2310418..2312625(-) (recG) [Streptomyces sp. cg36]
MDRVPALDEPLKKLLGGPTAKVLADHLGLHTVGDLLHHYPRRYEERGQLTRLADLPLDEDVTVVAQVADARVHTFNGGRG
QRLEITITDGSGRLQLVFFGRGIHKPHKELLPGSRAMFAGKVSMFNRRLQLAHPTYAKLAADGAEDGGSDDVVDSWAGAL
IPIYPACKGLESWKIAKAVDAVLPSAREALDPLPPALREGRGFVPLPEALLKVHRPHSKDDVEQARQRLKWDEAFVLQVA
LARRRFADAQLPAVARRPVPGGLLDAFDAKLPFTLTDGQTKVSGEIFADLATEHPMHRLLQGEVGSGKTMVALRAMLAVV
DSGGQAAMLAPTEVLAQQHHRSITEMMGELAEAGLLGGSDLGTKVVLLTGSMGAPARRQALLDLVTGEAGIVIGTHALIE
DKVRFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAQ
DKPHFLARAWERVREEVAKGHQGYVVCPRIGDDEDQKKAARKKSAEDDAEKRPPLAVLDLADELARGPLQGLRVEVLHGR
MQPDDKDGVMRRFAAGEADVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGAAPGLCLLVTEMPEASAA
RARLNAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIDDEEVIAAAREEAVQVVAEDPDLEHLPALRTAL
DALLDEDREQYLEKG

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=926427 AB5J87_RS10125 WP_369376048.1 2310418..2312625(-) (recG) [Streptomyces sp. cg36]
ATGGACCGCGTGCCTGCGCTCGACGAACCCCTCAAGAAGCTGCTCGGCGGACCCACCGCGAAGGTGCTGGCCGACCACCT
CGGCCTGCACACGGTCGGCGACCTCCTCCACCACTACCCCCGGCGGTACGAGGAGCGCGGCCAGCTGACCAGGCTGGCCG
ACCTGCCGCTGGACGAGGACGTGACGGTGGTCGCCCAGGTCGCCGACGCGCGCGTGCACACCTTCAACGGCGGCCGGGGC
CAGCGCCTGGAGATCACCATCACCGACGGCAGCGGCCGTCTCCAGCTGGTGTTCTTCGGGCGCGGCATCCACAAGCCCCA
CAAGGAGCTGCTGCCCGGCAGCCGCGCCATGTTCGCGGGCAAGGTGTCGATGTTCAACCGCCGCCTCCAGCTCGCCCACC
CCACGTACGCGAAGCTGGCCGCCGACGGCGCGGAGGACGGCGGGAGCGACGACGTCGTCGACTCCTGGGCGGGCGCGCTC
ATCCCGATCTACCCCGCCTGCAAGGGCCTGGAGTCCTGGAAGATCGCCAAGGCGGTGGACGCGGTGCTGCCCAGCGCCCG
GGAGGCGCTCGACCCGCTGCCGCCCGCCCTGCGGGAGGGCCGGGGCTTCGTCCCGCTGCCCGAGGCGCTCCTGAAGGTTC
ACCGCCCGCACAGCAAGGACGATGTGGAGCAGGCCCGGCAGCGGCTGAAGTGGGACGAGGCGTTCGTCCTCCAAGTGGCG
CTGGCCCGGCGCCGGTTCGCGGACGCGCAGCTGCCCGCGGTGGCCCGCAGGCCGGTTCCCGGCGGACTGCTCGACGCCTT
CGACGCCAAGCTCCCGTTCACCCTCACCGACGGCCAGACCAAGGTCTCCGGGGAGATCTTCGCCGACCTGGCCACCGAGC
ACCCCATGCACCGGCTGCTCCAGGGCGAGGTCGGCTCGGGCAAGACGATGGTCGCCCTGCGCGCGATGCTCGCCGTGGTC
GACTCCGGCGGCCAGGCCGCGATGCTCGCCCCCACCGAGGTCCTCGCCCAGCAGCACCACCGCTCGATCACCGAGATGAT
GGGCGAGCTCGCCGAGGCGGGCCTGCTCGGCGGCTCCGACCTGGGCACCAAGGTCGTGCTGCTGACCGGCTCGATGGGCG
CGCCGGCCCGCCGCCAGGCACTGCTCGACCTGGTCACCGGCGAGGCCGGGATCGTGATCGGCACGCACGCGCTGATCGAG
GACAAGGTGCGGTTCCACGACCTGGGCCTGGTGGTGGTCGACGAGCAGCACCGGTTCGGCGTGGAGCAGCGCGACGCCCT
GCGCGGCAAGGGCAAGCAGCCCCCGCACCTGCTGGTGATGACCGCGACCCCGATTCCGCGCACGGTCGCGATGACCGTCT
TCGGCGACCTGGAGACCTCGGTCCTGGACCAGCTGCCGGCCGGCCGTTCGCCGATCGCCAGCCATGTGGTCCCCGCCCAG
GACAAGCCGCACTTCCTGGCCCGCGCCTGGGAGCGGGTGCGCGAGGAGGTCGCCAAGGGGCACCAAGGCTATGTGGTGTG
CCCCCGGATCGGGGACGACGAGGACCAGAAGAAGGCGGCCCGGAAGAAGTCCGCCGAGGACGACGCCGAGAAGCGCCCCC
CGCTCGCCGTGCTGGACCTCGCGGACGAGCTCGCCCGGGGTCCGCTCCAGGGCCTGCGCGTGGAGGTGCTGCACGGGCGG
ATGCAGCCCGACGACAAGGACGGCGTGATGCGCCGGTTCGCGGCCGGCGAGGCCGACGTGCTGGTGGCGACGACGGTCAT
CGAGGTCGGGGTGAACGTGCCGAACGCCACGGCCATGGTGATCATGGACGCGGACCGGTTCGGCGTCTCCCAGCTGCACC
AGCTGCGCGGCCGGGTCGGCCGCGGCGCCGCCCCGGGCCTGTGCCTGCTGGTCACCGAGATGCCGGAGGCGAGCGCCGCC
AGGGCCCGGCTGAACGCGGTGGCCGCCACCCTGGACGGCTTCGAGCTCTCCCGGATCGACCTGGAGCAGCGCCGCGAGGG
CGACGTGCTGGGCCAGGCCCAGTCGGGGGTGCGCTCCTCGCTGCGGATGCTCGCGGTCATCGACGACGAGGAGGTCATCG
CGGCGGCCCGCGAGGAGGCGGTGCAGGTGGTGGCCGAGGACCCGGACCTGGAGCACCTGCCCGCGCTGCGCACGGCGCTG
GACGCCCTGCTGGACGAGGACCGCGAGCAGTACCTGGAAAAGGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(650-711)

DEAD/DEAH box helicase (DEAD)

(299-449)

Helicase conserved C-terminal domain (Helicase_C)

(550-622)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

39.143

95.238

0.373