Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VOI35_RS08340 Genome accession   NZ_CP142685
Coordinates   1786748..1787176 (-) Length   142 a.a.
NCBI ID   WP_407275595.1    Uniprot ID   -
Organism   Halothiobacillus sp. DCM-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1781748..1792176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI35_RS08325 (VOI35_08310) - 1783700..1785715 (-) 2016 WP_407275592.1 methyl-accepting chemotaxis protein -
  VOI35_RS08330 (VOI35_08315) - 1785790..1786305 (-) 516 WP_407275593.1 chemotaxis protein CheW -
  VOI35_RS08335 (VOI35_08320) - 1786331..1786693 (-) 363 WP_407275594.1 PleD family two-component system response regulator -
  VOI35_RS08340 (VOI35_08325) pilG 1786748..1787176 (-) 429 WP_407275595.1 PleD family two-component system response regulator Regulator
  VOI35_RS08345 (VOI35_08330) gshA 1787430..1788755 (+) 1326 WP_407275596.1 glutamate--cysteine ligase -
  VOI35_RS08350 (VOI35_08335) gshB 1788752..1789708 (+) 957 WP_407275597.1 glutathione synthase -
  VOI35_RS08355 (VOI35_08340) - 1789705..1790790 (+) 1086 WP_407275598.1 FAD:protein FMN transferase -
  VOI35_RS08360 (VOI35_08345) - 1790936..1791709 (+) 774 WP_407275599.1 energy transducer TonB -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15204.34 Da        Isoelectric Point: 5.1496

>NTDB_id=926418 VOI35_RS08340 WP_407275595.1 1786748..1787176(-) (pilG) [Halothiobacillus sp. DCM-1]
MENSMDSVGGSFSFPGLKVLIVDDSKTIRRTADTLLSKAGCQIESAVDGFDALAKIGDFSPDVVIIDILMPRLDGYQTTA
IIKHNARFAQTPVILLSSKDSIFDKARGNIVGASDYLTKPFTSEELFGAIARFANAGQTRAA

Nucleotide


Download         Length: 429 bp        

>NTDB_id=926418 VOI35_RS08340 WP_407275595.1 1786748..1787176(-) (pilG) [Halothiobacillus sp. DCM-1]
ATGGAAAATTCGATGGACTCGGTGGGCGGCAGTTTCAGCTTTCCGGGGTTGAAAGTACTGATTGTCGATGACAGTAAAAC
GATCCGCCGCACCGCAGATACCCTGCTCTCCAAGGCGGGTTGTCAGATCGAAAGTGCGGTGGATGGGTTCGACGCATTGG
CCAAGATTGGCGATTTTTCTCCTGATGTGGTGATCATCGACATCCTGATGCCGCGACTGGATGGTTATCAAACCACGGCG
ATCATCAAACACAATGCGCGCTTTGCGCAAACGCCGGTGATTTTGCTGTCAAGCAAAGACAGTATTTTCGATAAGGCGCG
GGGTAATATCGTCGGCGCCTCCGACTACCTGACCAAGCCCTTCACCAGTGAAGAGCTGTTTGGCGCCATTGCGCGCTTTG
CTAACGCGGGGCAGACACGGGCCGCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(19-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.475

83.099

0.486