Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   AB5J72_RS34415 Genome accession   NZ_CP163518
Coordinates   7351957..7354179 (+) Length   740 a.a.
NCBI ID   WP_369392111.1    Uniprot ID   -
Organism   Streptomyces sp. CG1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7346957..7359179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J72_RS34410 (AB5J72_34410) - 7349885..7351735 (-) 1851 WP_369392110.1 HSP90 family protein -
  AB5J72_RS34415 (AB5J72_34415) recG/mmsA 7351957..7354179 (+) 2223 WP_369392111.1 ATP-dependent DNA helicase RecG Machinery gene
  AB5J72_RS34420 (AB5J72_34420) rsmD 7354261..7354848 (+) 588 WP_369392112.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB5J72_RS34425 (AB5J72_34425) coaD 7354875..7355354 (+) 480 WP_369392113.1 pantetheine-phosphate adenylyltransferase -
  AB5J72_RS34430 (AB5J72_34430) - 7355412..7356491 (+) 1080 WP_369392114.1 ATP synthase F0 subunit B -
  AB5J72_RS34435 (AB5J72_34435) - 7356675..7357325 (+) 651 WP_369392115.1 DUF177 domain-containing protein -
  AB5J72_RS34440 (AB5J72_34440) rpmF 7357328..7357501 (+) 174 WP_003951102.1 50S ribosomal protein L32 -
  AB5J72_RS34445 (AB5J72_34445) rnc 7357521..7358327 (+) 807 WP_369392116.1 ribonuclease III -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80179.99 Da        Isoelectric Point: 6.2165

>NTDB_id=926384 AB5J72_RS34415 WP_369392111.1 7351957..7354179(+) (recG/mmsA) [Streptomyces sp. CG1]
MDLVPALEEPLKQPLKSVLGSATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLLTFA
SAKAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKELLPGTRAMFAGKVSVFNHRLQLAHPAYELLRGDSDETVESWA
GALIPLYPATAKLESWKIGKAVQTVLPTAQEALDPLPPSLREGRALLPLPEAILKIHRPHTKADIADARARLKWDEAFVL
QVALARRRHADAQLPAVPRRPKPDGLLAAFDDCLPFTLTEGQQKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAML
AVVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEHATKVVLLTGSMGAATRRQALLDLVTGEAGIVIGTHA
LIEDKIQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVV
PAADKPHFLARAWERIREEVANGHQAYVVCPRIGDDIDDAADPKKAKKSPEDEAEKRPPLAVLDVAEQLAKGPLQGLKVE
VLHGRMHPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMP
EASAARQRLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLAVIEDEEVIAEAREEASAVVAADPELQQLPG
LRTALDALLDEEREQYLEKG

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=926384 AB5J72_RS34415 WP_369392111.1 7351957..7354179(+) (recG/mmsA) [Streptomyces sp. CG1]
ATGGATCTCGTGCCCGCACTGGAAGAACCACTGAAGCAGCCACTGAAGTCAGTGCTCGGCTCCGCCACCGCGAAGGTGAT
GGCCGAGCACCTCGGCCTGCACACCGTAGGCGACCTCCTCCACCACTACCCGCGCAGATACGAGGAGCGCGGCCAGCTCA
CCCATCTCGCCGACCTCCCCATGGACGAGCACGTCACGGTGGTCGCCCAGGTGGCCGACGCCCGGCTGCTCACTTTCGCC
TCCGCCAAGGCCCCCCGCGGCAAGGGCCAGCGCCTGGAGGTCACGATCACCGACGGCAGCGGCCGGCTCCAGCTGGTCTT
CTTCGGCAACGGCGTCCACAAACCCCACAAGGAGCTGCTGCCGGGCACACGCGCGATGTTCGCCGGCAAGGTCTCCGTCT
TCAACCATCGCCTCCAACTCGCCCATCCTGCCTACGAGTTGCTGCGAGGTGACAGCGACGAGACGGTCGAGAGCTGGGCC
GGGGCCCTGATCCCCCTGTACCCGGCCACGGCCAAACTGGAGTCCTGGAAGATCGGCAAGGCGGTCCAGACCGTCCTGCC
CACCGCCCAGGAGGCCCTCGACCCGCTGCCGCCGTCCCTCCGTGAGGGCCGCGCCCTCCTGCCTCTCCCCGAGGCCATCC
TCAAGATCCACCGCCCGCACACCAAGGCCGACATCGCGGACGCGCGCGCCCGCCTGAAGTGGGACGAGGCCTTCGTCCTC
CAGGTCGCCCTCGCCCGCCGCCGCCACGCCGACGCCCAGCTCCCGGCCGTCCCCCGCCGCCCGAAGCCCGACGGCCTCCT
TGCGGCCTTCGACGACTGCCTGCCCTTCACCCTCACCGAGGGCCAGCAGAAGGTCTCCAAGGAGATCTTCGACGACCTCG
CCACGGAACACCCGATGCACCGCCTGCTGCAGGGCGAGGTCGGCAGTGGGAAGACCATGGTGGCTCTCCGTGCCATGCTC
GCCGTGGTCGACGCCGGGGGGCAGGCGGCCATGCTCGCGCCCACCGAGGTCCTCGCCCAGCAGCACCACCGCTCCATCAC
CGAGATGATGGGCGAGCTGGCCGAGGGCGGCATGCTGGGCGGCGCCGAGCACGCCACCAAGGTCGTGCTGCTCACCGGCT
CCATGGGCGCCGCCACCCGCCGCCAGGCCCTGCTGGACCTGGTCACCGGCGAGGCCGGCATCGTCATCGGCACCCATGCC
CTGATCGAGGACAAGATCCAGTTCCATGACCTCGGCCTGGTCGTGGTCGACGAACAGCACCGCTTCGGCGTGGAACAGCG
AGACGCCCTGCGCGGCAAGGGAAAACAGCCTCCCCACCTCCTGGTCATGACGGCCACCCCCATCCCGCGCACGGTCGCCA
TGACGGTCTTCGGCGACCTGGAGACCTCCGTCCTCGACCAGCTCCCGGCAGGCCGCTCCCCGATCGCCAGCCATGTCGTC
CCCGCCGCCGACAAGCCCCACTTCCTCGCCCGCGCCTGGGAGCGGATTCGCGAGGAGGTGGCGAACGGCCACCAGGCGTA
CGTCGTCTGCCCCCGCATCGGCGACGACATCGACGATGCCGCCGACCCGAAGAAGGCGAAGAAGTCCCCGGAGGACGAGG
CCGAGAAGCGTCCGCCCCTGGCCGTCCTCGACGTGGCGGAACAACTGGCCAAGGGTCCCCTCCAGGGCCTGAAGGTCGAG
GTCCTCCACGGCCGTATGCACCCCGACGACAAGGATGCGGTGATGCGCCGCTTCGCGGCCGGTGAGACGGACGTCCTGGT
CGCCACGACCGTGATCGAGGTCGGCGTGAACGTCCCCAACGCCACCGCCATGGTGATCATGGACGCGGACCGTTTCGGCG
TCTCCCAGCTCCACCAGCTCCGCGGCCGAGTCGGCCGCGGCTCGGCCCCCGGTCTCTGCCTCCTGGTCACCGAGATGCCC
GAGGCCAGCGCCGCCCGCCAGCGCCTGAATGCCGTCGCCTCCACCCTCGACGGCTTCGAGCTCTCCCGCATCGACCTCGA
ACAGCGCCGCGAGGGCGACGTCCTCGGCCAGGCCCAGTCCGGCGCCCGCACCAGCCTGCGGGTCCTCGCGGTCATCGAGG
ACGAGGAGGTCATCGCGGAGGCGAGGGAGGAGGCGTCGGCGGTCGTCGCGGCGGATCCGGAGCTGCAGCAGCTTCCCGGC
TTGCGTACGGCCTTGGACGCCCTGTTGGACGAGGAGAGGGAGCAGTACTTGGAAAAGGGCTAG

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(655-717)

Helicase conserved C-terminal domain (Helicase_C)

(551-627)

DEAD/DEAH box helicase (DEAD)

(299-452)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(65-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

36.951

98.378

0.364
  recG/mmsA Streptococcus pneumoniae R36A

36.951

98.378

0.364