Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   VSY18_RS20320 Genome accession   NZ_CP142670
Coordinates   3942523..3942981 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus albus strain YK87     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3937523..3947981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSY18_RS20305 (VSY18_20305) - 3938194..3938430 (+) 237 WP_048530745.1 hypothetical protein -
  VSY18_RS20310 (VSY18_20310) - 3938590..3940698 (-) 2109 WP_048530747.1 polyphosphate kinase -
  VSY18_RS20315 (VSY18_20315) ppx 3940807..3942345 (-) 1539 WP_071758746.1 exopolyphosphatase -
  VSY18_RS20320 (VSY18_20320) kre 3942523..3942981 (+) 459 WP_000804864.1 YkyB family protein Regulator
  VSY18_RS20325 (VSY18_20325) - 3943013..3943675 (-) 663 WP_247998511.1 YkyA family protein -
  VSY18_RS20330 (VSY18_20330) - 3944319..3944960 (-) 642 WP_247998512.1 diguanylate cyclase domain-containing protein -
  VSY18_RS20335 (VSY18_20335) - 3945125..3945358 (+) 234 WP_071758744.1 phage holin -
  VSY18_RS20340 (VSY18_20340) - 3945391..3945891 (-) 501 WP_166688096.1 hypothetical protein -
  VSY18_RS20345 (VSY18_20345) - 3946295..3947836 (+) 1542 WP_071758742.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=926332 VSY18_RS20320 WP_000804864.1 3942523..3942981(+) (kre) [Bacillus albus strain YK87]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=926332 VSY18_RS20320 WP_000804864.1 3942523..3942981(+) (kre) [Bacillus albus strain YK87]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAGTATTTATACTGGTTAAAAAAGACGGCTTTAGAACGCTTAATTGCTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGCCAACAACAATCCGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATTCCTCCTACCAAAGAAGATTTTCGAATCCTACCACACCTTGGCCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAGACACTTCAAGATTACATTGGTCCTGAAGCACTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTCCCGTGGTATAGTCGTACGTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493