Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VSY18_RS09905 Genome accession   NZ_CP142670
Coordinates   1906498..1906785 (+) Length   95 a.a.
NCBI ID   WP_000648329.1    Uniprot ID   A0A2A7D356
Organism   Bacillus albus strain YK87     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1901498..1911785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSY18_RS09885 (VSY18_09885) - 1902731..1902874 (+) 144 WP_350222565.1 DUF4083 family protein -
  VSY18_RS09890 (VSY18_09890) - 1902905..1903366 (+) 462 WP_048527390.1 NUDIX hydrolase -
  VSY18_RS09895 (VSY18_09895) nadE 1903413..1904231 (-) 819 WP_048527391.1 ammonia-dependent NAD(+) synthetase -
  VSY18_RS09900 (VSY18_09900) - 1904502..1906382 (+) 1881 WP_270672816.1 ABC transporter permease -
  VSY18_RS09905 (VSY18_09905) abrB 1906498..1906785 (+) 288 WP_000648329.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  VSY18_RS09910 (VSY18_09910) - 1907031..1907981 (+) 951 WP_048527393.1 serine protease -
  VSY18_RS09915 (VSY18_09915) - 1908022..1908330 (-) 309 WP_048527394.1 ArsR/SmtB family transcription factor -
  VSY18_RS09920 (VSY18_09920) - 1908439..1909374 (+) 936 WP_166689135.1 aldo/keto reductase -
  VSY18_RS09925 (VSY18_09925) - 1909424..1910600 (+) 1177 Protein_1869 MFS transporter -
  VSY18_RS09930 (VSY18_09930) - 1910649..1910850 (+) 202 Protein_1870 hypothetical protein -
  VSY18_RS09935 (VSY18_09935) - 1910896..1911120 (-) 225 WP_000162601.1 hypothetical protein -
  VSY18_RS09940 (VSY18_09940) - 1911205..1911552 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10591.31 Da        Isoelectric Point: 6.9795

>NTDB_id=926325 VSY18_RS09905 WP_000648329.1 1906498..1906785(+) (abrB) [Bacillus albus strain YK87]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
HLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=926325 VSY18_RS09905 WP_000648329.1 1906498..1906785(+) (abrB) [Bacillus albus strain YK87]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGGGCGAAA
CATTTAATAAAAGAAATAGAGAAGTTTTTAAATAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7D356

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516