Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   VSY18_RS07930 Genome accession   NZ_CP142670
Coordinates   1511697..1512299 (-) Length   200 a.a.
NCBI ID   WP_000155592.1    Uniprot ID   A0A0G8BSW4
Organism   Bacillus albus strain YK87     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1506697..1517299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSY18_RS07910 (VSY18_07910) dnaD 1507019..1507726 (+) 708 WP_071757493.1 DNA replication protein DnaD -
  VSY18_RS07915 (VSY18_07915) nth 1507742..1508389 (+) 648 WP_098345142.1 endonuclease III -
  VSY18_RS07920 (VSY18_07920) - 1508393..1508911 (+) 519 WP_166688494.1 YpoC family protein -
  VSY18_RS07925 (VSY18_07925) - 1508935..1511631 (-) 2697 WP_247998869.1 PBP1A family penicillin-binding protein -
  VSY18_RS07930 (VSY18_07930) recU 1511697..1512299 (-) 603 WP_000155592.1 Holliday junction resolvase RecU Machinery gene
  VSY18_RS07935 (VSY18_07935) - 1512403..1513428 (+) 1026 WP_270672409.1 DUF2515 domain-containing protein -
  VSY18_RS07940 (VSY18_07940) - 1513586..1513762 (-) 177 WP_052904093.1 hypothetical protein -
  VSY18_RS07945 (VSY18_07945) - 1513848..1514090 (+) 243 WP_001252039.1 hypothetical protein -
  VSY18_RS07950 (VSY18_07950) - 1514106..1514450 (+) 345 WP_166688497.1 YppE family protein -
  VSY18_RS07955 (VSY18_07955) - 1514476..1514667 (-) 192 WP_048527089.1 YppF family protein -
  VSY18_RS07960 (VSY18_07960) - 1514845..1515315 (+) 471 WP_270672408.1 YppG family protein -
  VSY18_RS07965 (VSY18_07965) - 1515471..1515914 (+) 444 WP_166688499.1 CotD family spore coat protein -
  VSY18_RS07970 (VSY18_07970) - 1515971..1516525 (+) 555 WP_048527093.1 DUF1273 domain-containing protein -
  VSY18_RS07975 (VSY18_07975) gpsB 1516623..1516961 (+) 339 WP_000622433.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.61 Da        Isoelectric Point: 9.4277

>NTDB_id=926324 VSY18_RS07930 WP_000155592.1 1511697..1512299(-) (recU) [Bacillus albus strain YK87]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=926324 VSY18_RS07930 WP_000155592.1 1511697..1512299(-) (recU) [Bacillus albus strain YK87]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACGAATGAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGAAGAAAATCAATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCGTGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8BSW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63