Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   VSY18_RS06605 Genome accession   NZ_CP142670
Coordinates   1269437..1269760 (-) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus albus strain YK87     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1264437..1274760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSY18_RS06575 (VSY18_06575) - 1264489..1264716 (+) 228 WP_000251865.1 hypothetical protein -
  VSY18_RS06580 (VSY18_06580) - 1264872..1266158 (+) 1287 WP_048526761.1 D-alanyl-D-alanine carboxypeptidase family protein -
  VSY18_RS06585 (VSY18_06585) sipW 1266350..1266919 (+) 570 WP_128974570.1 signal peptidase I SipW -
  VSY18_RS06590 (VSY18_06590) - 1266982..1267569 (+) 588 WP_048526763.1 CalY family protein -
  VSY18_RS06595 (VSY18_06595) - 1267704..1268495 (+) 792 WP_071758947.1 DUF4047 domain-containing protein -
  VSY18_RS06600 (VSY18_06600) calY 1268769..1269362 (+) 594 WP_048526765.1 biofilm matrix protein CalY -
  VSY18_RS06605 (VSY18_06605) sinR 1269437..1269760 (-) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  VSY18_RS06610 (VSY18_06610) - 1269840..1269974 (-) 135 WP_048526766.1 anti-repressor SinI family protein -
  VSY18_RS06615 (VSY18_06615) inhA1 1270318..1272708 (+) 2391 WP_270734986.1 M6 family metalloprotease immune inhibitor InhA1 -
  VSY18_RS06620 (VSY18_06620) - 1272880..1274247 (+) 1368 WP_329368281.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=926322 VSY18_RS06605 WP_000578882.1 1269437..1269760(-) (sinR) [Bacillus albus strain YK87]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=926322 VSY18_RS06605 WP_000578882.1 1269437..1269760(-) (sinR) [Bacillus albus strain YK87]
ATGATTGGAGAACGTATAAAACGCCTGCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATTGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692