Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VSY18_RS06225 Genome accession   NZ_CP142670
Coordinates   1200405..1202231 (+) Length   608 a.a.
NCBI ID   WP_048526703.1    Uniprot ID   A0A8T9ZEW9
Organism   Bacillus albus strain YK87     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195405..1207231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSY18_RS06205 (VSY18_06205) - 1195712..1196386 (-) 675 WP_071757024.1 TerC family protein -
  VSY18_RS06210 (VSY18_06210) mecA 1196729..1197412 (+) 684 WP_000350711.1 adaptor protein MecA Regulator
  VSY18_RS06215 (VSY18_06215) - 1197485..1199029 (+) 1545 WP_048526701.1 cardiolipin synthase -
  VSY18_RS06220 (VSY18_06220) - 1199110..1200354 (+) 1245 WP_270738788.1 competence protein CoiA -
  VSY18_RS06225 (VSY18_06225) pepF 1200405..1202231 (+) 1827 WP_048526703.1 oligoendopeptidase F Regulator
  VSY18_RS06230 (VSY18_06230) - 1202349..1202522 (-) 174 WP_002051510.1 hypothetical protein -
  VSY18_RS06235 (VSY18_06235) - 1202752..1203645 (-) 894 WP_195756192.1 ClpXP adapter SpxH family protein -
  VSY18_RS06240 (VSY18_06240) - 1203645..1204043 (-) 399 WP_000043381.1 hypothetical protein -
  VSY18_RS06245 (VSY18_06245) - 1204224..1204802 (-) 579 WP_247998858.1 CYTH domain-containing protein -
  VSY18_RS06250 (VSY18_06250) - 1204947..1205318 (+) 372 WP_048526706.1 hypothetical protein -
  VSY18_RS06255 (VSY18_06255) - 1205349..1205987 (+) 639 WP_001081485.1 GTP pyrophosphokinase family protein -
  VSY18_RS06260 (VSY18_06260) - 1206006..1206803 (+) 798 WP_000673182.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70267.53 Da        Isoelectric Point: 4.6201

>NTDB_id=926321 VSY18_RS06225 WP_048526703.1 1200405..1202231(+) (pepF) [Bacillus albus strain YK87]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIVHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=926321 VSY18_RS06225 WP_048526703.1 1200405..1202231(+) (pepF) [Bacillus albus strain YK87]
ATGTCTGAACAAAACACAGCAAAAACATTACCGGATCGCAACGAGATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGTTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGACCGCGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTCTTGA
AAGAAAATAGAGACTTAAGTGTATATGAGCATGCGTTAGAAGAAATTACGCGTCAACGCCCTCACGTATTATCTGAAGCG
GAAGAAGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGCGAGGATGGAGAAGAAATAGAAATTACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTACGCGAAGATGCGTTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAACGTAATAATTTCAATGCCCGAGTTCGCAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCACAAGACATGTTATTAAAGTCTTTAAATGTGCTTGGTGATGAGTATGTTGATATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCG
GTGCATAGTTACTACACAAGAAAAACGCAACCGCACGTATACGGTGACTATTCAATCTTCGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCAGAGTTTGAGCATATTGTTCATAAGAAAGTACAA
GAGGGACATGCGGTTACGCCAGACATGTTAACAGAGATTTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATCGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GCTTTAGTGCAGCGACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTACCCAATTGAAGTGCTGAAAAAAGCTGGGGTAGATATGGCATCTCCAGAACCAGTAAA
AGAAGCCTTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

97.533

0.487