Detailed information NTG0926316

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB6W67_RS20195
• Genome accession: NZ_CP163516
• Coordinates: 4111652..4112644 (-)
• Length: 330 a.a.
• NCBI ID: WP_369397164.1
• Uniprot ID: -
• Organism: Escherichia coli isolate FELIX_MS516
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4106652..4117644

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB6W67_RS20175 (AB6W67_20175)	otnK	4107428..4108594 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
AB6W67_RS20180 (AB6W67_20180)	ygbL	4108686..4109324 (+)	639	WP_001278994.1	aldolase	-
AB6W67_RS20185 (AB6W67_20185)	ygbM	4109329..4110105 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
AB6W67_RS20190 (AB6W67_20190)	ygbN	4110194..4111558 (+)	1365	WP_000104441.1	GntP family transporter	-
AB6W67_RS20195 (AB6W67_20195)	rpoS	4111652..4112644 (-)	993	WP_369397164.1	RNA polymerase sigma factor RpoS	Regulator
AB6W67_RS20200 (AB6W67_20200)	nlpD	4112707..4113801 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AB6W67_RS20205 (AB6W67_20205)	pcm	4113986..4114612 (-)	627	WP_194153277.1	protein-L-isoaspartate O-methyltransferase	-
AB6W67_RS20210 (AB6W67_20210)	surE	4114606..4115367 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB6W67_RS20215 (AB6W67_20215)	truD	4115348..4116397 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AB6W67_RS20220 (AB6W67_20220)	ispF	4116394..4116873 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB6W67_RS20225 (AB6W67_20225)	ispD	4116873..4117583 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38029.94 Da
• Isoelectric Point: 4.5886

>NTDB_id=926316 AB6W67_RS20195 WP_369397164.1 4111652..4112644(-) (rpoS) [Escherichia coli isolate FELIX_MS516]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEWEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=926316 AB6W67_RS20195 WP_369397164.1 4111652..4112644(-) (rpoS) [Escherichia coli isolate FELIX_MS516]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAATGGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715