Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   VMR32_RS24125 Genome accession   NZ_CP142601
Coordinates   5185295..5185852 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Tongji     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5180295..5190852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VMR32_RS24105 (VMR32_24105) pilR 5181571..5182908 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  VMR32_RS24110 (VMR32_24110) thiO 5182954..5184048 (-) 1095 WP_023084775.1 glycine oxidase ThiO -
  VMR32_RS24115 (VMR32_24115) - 5184183..5184692 (+) 510 WP_017002065.1 GspH/FimT family pseudopilin -
  VMR32_RS24120 (VMR32_24120) - 5184798..5185304 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  VMR32_RS24125 (VMR32_24125) pilV 5185295..5185852 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  VMR32_RS24130 (VMR32_24130) pilW 5185849..5186673 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  VMR32_RS24135 (VMR32_24135) pilX 5186670..5187257 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  VMR32_RS24140 (VMR32_24140) pilY1 5187269..5190760 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=926193 VMR32_RS24125 WP_003119423.1 5185295..5185852(+) (pilV) [Pseudomonas aeruginosa strain Tongji]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=926193 VMR32_RS24125 WP_003119423.1 5185295..5185852(+) (pilV) [Pseudomonas aeruginosa strain Tongji]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995