Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   QUE39_RS07035 Genome accession   NZ_AP025540
Coordinates   1320435..1321313 (+) Length   292 a.a.
NCBI ID   WP_011228638.1    Uniprot ID   -
Organism   Thermus thermophilus strain HB8_001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1315435..1326313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE39_RS07010 (TthHB8_13610) - 1316432..1316923 (+) 492 WP_011173430.1 DUF5317 domain-containing protein -
  QUE39_RS07015 (TthHB8_13620) - 1316978..1317982 (+) 1005 WP_011173431.1 homoisocitrate dehydrogenase -
  QUE39_RS07020 (TthHB8_13630) pilM 1318118..1319251 (+) 1134 WP_011228636.1 type IV pilus assembly protein PilM Machinery gene
  QUE39_RS07025 (TthHB8_13640) pilN 1319244..1319867 (+) 624 WP_011228637.1 competence protein Machinery gene
  QUE39_RS07030 (TthHB8_13650) pilO 1319857..1320438 (+) 582 WP_011173434.1 type 4a pilus biogenesis protein PilO Machinery gene
  QUE39_RS07035 (TthHB8_13660) pilW 1320435..1321313 (+) 879 WP_011228638.1 competence protein Machinery gene
  QUE39_RS07040 (TthHB8_13670) pilQ 1321310..1323583 (+) 2274 WP_011228639.1 secretin N-terminal domain-containing protein Machinery gene
  QUE39_RS07045 (TthHB8_13680) aroC 1323642..1324793 (+) 1152 WP_011228640.1 chorismate synthase -
  QUE39_RS07050 (TthHB8_13690) - 1324818..1325372 (+) 555 WP_008632876.1 shikimate kinase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 29896.42 Da        Isoelectric Point: 4.6515

>NTDB_id=92618 QUE39_RS07035 WP_011228638.1 1320435..1321313(+) (pilW) [Thermus thermophilus strain HB8_001]
MKNAWQRLKEAWANLPRSTKLLLAALLLVGNVALWYVGLYLPAQVAEAPTPVPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPASSQEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASRPTPVPEGPAVRVQTPAQAPQAAPATRPIPG
TSGALPAPKILSPALSAPLPQARETPPKVAVPTALVEAPLPGPEEKGAEKAPTPASPLERLVAEKGLRLSGTLLGPVSVA
ILESKEGYLVVPAGSPIPGTEAVVRQVEEGSVTLALKEETLSLSLVQAGGGQ

Nucleotide


Download         Length: 879 bp        

>NTDB_id=92618 QUE39_RS07035 WP_011228638.1 1320435..1321313(+) (pilW) [Thermus thermophilus strain HB8_001]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGCCAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGAACGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAGCGCCCACCCCGGTCCCCT
CCACGCAGGTCATCGAGGCCCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAGGAGGCCCAGGCGCCCGCTTCTTCCCAAGAGGAGGCCCAGGCGCCCCCGCCTGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCCACGCCCG
TCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCCGCCCAAGCCCCCCAGGCGGCCCCCGCCACCCGGCCCATCCCCGGG
ACCTCCGGCGCCCTCCCGGCGCCCAAGATCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGAGACGCCGCC
CAAGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAGGGGGCGGAGAAGGCCCCCACCC
CGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCCGTGAGCGTGGCC
ATCCTGGAGAGCAAGGAGGGCTACCTCGTCGTCCCGGCGGGAAGCCCCATCCCCGGCACGGAGGCCGTGGTGCGCCAGGT
GGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAGCCTGTCCCTCGTCCAAGCTGGAGGTGGCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

98.63

100

0.986

Multiple sequence alignment